TCDA Transcript fusion

  FCG

  Home

  PDGs

  Search

  Expression

  Copy Number

  Mutation

  Transcript Fusion

  Download

  Help

  About

Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
Showing page 186	first page \| previous page \| next page \| last page

Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LGG	TCGA-DU-5855-01A	TCGA-DU-5855	CAMK2D\|ANK2	CAMK2D	ANK2	4	4	-1	1	27	11	10	0.87	114436225	114179206	tier1	In-frame	2922	NA	0.38162
LUSC	TCGA-98-A53A-01A	TCGA-98-A53A	CAMK2D\|ANK2	CAMK2D	ANK2	4	4	-1	1	8	4	4	0.87	114430794	114302613	tier1	In-frame	2921	NA	0.38162
UCEC	TCGA-KP-A3W4-01A	TCGA-KP-A3W4	CAMK2D\|STAC3	CAMK2D	STAC3	4	12	-1	-1	2	2	2	1.2	114386685	57638994	tier3	Out-of-frame	2923	NA	0.38137
SKCM	TCGA-W3-A825-06A	TCGA-W3-A825	SETD7\|NPY5R	SETD7	NPY5R	4	4	-1	1	42	34	30	0.84	140468074	164266866	tier1	CDS-5UTR	15709	NA	0
SARC	TCGA-DX-A3UA-01A	TCGA-DX-A3UA	SETD7\|ACAD11	SETD7	ACAD11	4	3	-1	-1	17	5	5	1.1	140439039	132363740	tier1	In-frame	15708	NA	0
LUAD	TCGA-86-A4D0-01A	TCGA-86-A4D0	PDGFC\|G3BP2	PDGFC	G3BP2	4	4	-1	-1	2	1	1	0.21	157891938	76587233	tier3	CDS-5UTR	12527	NA	0.37845
SKCM	TCGA-ER-A2NF-01A	TCGA-ER-A2NF	CBR4\|GALNTL6	CBR4	GALNTL6	4	4	-1	1	3	2	2	1.7	169923222	173730512	tier1	In-frame	3082	non-validated	0.34594
LUAD	TCGA-44-2662-01A	TCGA-44-2662	ADAMTS16\|TERT	ADAMTS16	TERT	5	5	1	-1	3	7	5	0.71	5191903	1282739	tier1	Out-of-frame	433	NA	0.37194
BRCA	TCGA-A7-A4SD-01A	TCGA-A7-A4SD	ADAMTS16\|ETV6	ADAMTS16	ETV6	5	12	1	1	59	15	14	1.4	5209359	11905384	tier1	In-frame	432	NA	0.37058
LUAD	TCGA-75-5122-01A	TCGA-75-5122	SRD5A1\|ADAMTS16	SRD5A1	ADAMTS16	5	5	1	1	5	7	5	0.41	6633982	5303381	tier1	In-frame	16824	NA	0
KIRP	TCGA-B9-A5W9-01A	TCGA-B9-A5W9	SRD5A1\|C1QTNF3	SRD5A1	C1QTNF3	5	5	1	-1	9	8	6	0.97	6633982	34035863	tier1	Out-of-frame	16825	NA	0
BRCA	TCGA-B6-A1KF-01A	TCGA-B6-A1KF	PIK3R1\|NDUFB7	PIK3R1	NDUFB7	5	19	1	-1	50	65	54	0.46	67576834	14677745	tier1	In-frame	12844	NA	0.38215
LIHC	TCGA-BW-A5NO-01A	TCGA-BW-A5NO	PIK3R1\|RP11-404L6.2	PIK3R1	RP11-404L6.2	5	5	1	1	2	3	3	0.009	67522837	67492198	tier2	CDS-5UTR	12846	non-validated	0.38077
LUSC	TCGA-77-A5GH-01A	TCGA-77-A5GH	PIK3R1\|RP11-404L6.2	PIK3R1	RP11-404L6.2	5	5	1	1	2	3	3	0.009	67576834	67492198	tier4	CDS-5UTR	12845	NA	0.38077
PRAD	TCGA-YL-A9WY-01A	TCGA-YL-A9WY	PIK3R1\|MRPL42	PIK3R1	MRPL42	5	12	1	1	12	4	3	0.78	67522837	93862965	tier2	CDS-5UTR	12843	NA	0.38354
HNSC	TCGA-CV-5441-01A	TCGA-CV-5441	CXCL14\|SUPT16H	CXCL14	SUPT16H	5	14	-1	-1	2	136	122	1.1	134906376	21829491	tier4	3UTR-CDS	4476	NA	0.37292
KIRP	TCGA-BQ-5884-01A	TCGA-BQ-5884	CXCL14\|C7	CXCL14	C7	5	5	-1	1	2	11	10	0.024	134906376	40954982	tier3	NA	4475	NA	0.35866
PRAD	TCGA-YJ-A8SW-01A	TCGA-YJ-A8SW	FARS2\|RIPK1	FARS2	RIPK1	6	6	1	1	8	6	5	0.27	5545573	3076998	tier1	CDS-5UTR	6256	NA	0.38693
SKCM	TCGA-WE-A8K1-06A	TCGA-WE-A8K1	FARS2\|CDYL	FARS2	CDYL	6	6	1	1	6	5	5	2.7	5261893	4891947	tier1	5UTR-CDS	6250	NA	0.3693
LUAD	TCGA-55-8620-01A	TCGA-55-8620	FARS2\|AKR1E2	FARS2	AKR1E2	6	10	1	1	6	1	1	1.2	5261893	4872867	tier3	5UTR-CDS	6248	NA	0.33494

Showing page 186

first page | previous page | next page | last page

  TCGA

  GDC

  NCI