Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CV-7430-01A | TCGA-CV-7430 | NCEH1|SPATA16 | NCEH1 | SPATA16 | 3 | 3 | -1 | -1 | 16 | 22 | 20 | 4.3 | 172428637 | 172674614 | tier1 | In-frame | 11153 | NA | 0.32812 |
| LUSC | TCGA-56-7580-01A | TCGA-56-7580 | NCEH1|FNDC3B | NCEH1 | FNDC3B | 3 | 3 | -1 | 1 | 16 | 5 | 5 | 0.38 | 172428637 | 171944661 | tier1 | Out-of-frame | 11152 | NA | 0.34293 |
| LUAD | TCGA-55-8301-01A | TCGA-55-8301 | VPRBP|POC1A | VPRBP | POC1A | 3 | 3 | -1 | -1 | 5 | 8 | 6 | 0.32 | 51497130 | 52185116 | tier1 | In-frame | 19604 | NA | 0 |
| UCEC | TCGA-BG-A3PP-01A | TCGA-BG-A3PP | VPRBP|C2CD3 | VPRBP | C2CD3 | 3 | 11 | -1 | -1 | 3 | 4 | 4 | 1.2 | 51533889 | 73850873 | tier1 | NA | 19603 | NA | 0 |
| BRCA | TCGA-A2-A3KC-01A | TCGA-A2-A3KC | MANF|SETD2 | MANF | SETD2 | 3 | 3 | 1 | -1 | 32 | 32 | 29 | 0.34 | 51423766 | 47108608 | tier2 | In-frame | 9824 | validated | 0.3584 |
| CESC | TCGA-C5-A8XK-01A | TCGA-C5-A8XK | MUC4|TNK2 | MUC4 | TNK2 | 3 | 3 | -1 | -1 | 8 | 17 | 16 | 0.065 | 195495893 | 195610180 | tier4 | Out-of-frame | 10858 | NA | 0.38146 |
| PAAD | TCGA-IB-AAUQ-01A | TCGA-IB-AAUQ | MUC4|PCYT1A | MUC4 | PCYT1A | 3 | 3 | -1 | -1 | 6 | 3 | 3 | 3.4 | 195538607 | 195941244 | tier4 | NA | 10857 | NA | 0.36672 |
| LIHC | TCGA-EP-A2KB-01A | TCGA-EP-A2KB | AHSG|STAT6 | AHSG | STAT6 | 3 | 12 | 1 | -1 | 2 | 52 | 35 | 0.07 | 186339107 | 57496773 | tier3 | NA | 706 | non-validated | 0.37354 |
| LUSC | TCGA-56-5898-01A | TCGA-56-5898 | ECE2|HTR3C | ECE2 | HTR3C | 3 | 3 | 1 | 1 | 47 | 35 | 31 | 0.21 | 183967678 | 183777616 | tier1 | In-frame | 5261 | NA | 0.34563 |
| LUAD | TCGA-91-6848-01A | TCGA-91-6848 | EPHA5|RUFY3 | EPHA5 | RUFY3 | 4 | 4 | -1 | 1 | 4 | 4 | 4 | 0.1 | 66356095 | 71628236 | tier1 | In-frame | 5671 | NA | 0.37276 |
| LUSC | TCGA-O2-A52V-01A | TCGA-O2-A52V | ATP10D|GABRA2 | ATP10D | GABRA2 | 4 | 4 | 1 | -1 | 53 | 40 | 35 | 0.11 | 47527659 | 46252621 | tier1 | Out-of-frame | 1661 | NA | 0.34427 |
| HNSC | TCGA-CV-6948-01A | TCGA-CV-6948 | ATP10D|GABRB1 | ATP10D | GABRB1 | 4 | 4 | 1 | 1 | 2 | 3 | 3 | 0.51 | 47487536 | 47033931 | tier2 | 5UTR-CDS | 1662 | NA | 0.36025 |
| SKCM | TCGA-HR-A2OH-01A | TCGA-HR-A2OH | ATP10D|FAM133A | ATP10D | FAM133A | 4 | X | 1 | 1 | 4 | 2 | 2 | 2.8 | 47538955 | 92953396 | tier1 | CDS-5UTR | 1659 | NA | 0.34703 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | SCD5|SEC31A | SCD5 | SEC31A | 4 | 4 | -1 | -1 | 14 | 6 | 6 | 0.14 | 83719459 | 83765662 | tier1 | Out-of-frame | 15399 | NA | 0 |
| PRAD | TCGA-HC-7212-01A | TCGA-HC-7212 | SCD5|STAP1 | SCD5 | STAP1 | 4 | 4 | -1 | 1 | 5 | 2 | 2 | 0.58 | 83557744 | 68472014 | tier1 | In-frame | 15400 | NA | 0 |
| LIHC | TCGA-DD-A3A8-01A | TCGA-DD-A3A8 | GC|DSP | GC | DSP | 4 | 6 | -1 | 1 | 2 | 89 | 2 | 2.4 | 72607413 | 7575528 | tier3 | 3UTR-CDS | 7007 | non-validated | 0.36626 |
| LUSC | TCGA-56-8305-01A | TCGA-56-8305 | TBCK|SLC9B2 | TBCK | SLC9B2 | 4 | 4 | -1 | -1 | 7 | 1 | 1 | 0.014 | 107216251 | 103947748 | tier2 | Out-of-frame | 17529 | NA | 0 |
| BRCA | TCGA-B6-A0RS-01A | TCGA-B6-A0RS | TBCK|USP10 | TBCK | USP10 | 4 | 16 | -1 | 1 | 5 | 4 | 3 | 2.3 | 107016639 | 84806147 | tier1 | In-frame | 17530 | NA | 0 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | TBCK|WDHD1 | TBCK | WDHD1 | 4 | 14 | -1 | -1 | 2 | 6 | 5 | 0.027 | 107092252 | 55434112 | tier4 | Out-of-frame | 17531 | NA | 0 |
| READ | TCGA-F5-6864-01A | TCGA-F5-6864 | CAMK2D|TLL2 | CAMK2D | TLL2 | 4 | 10 | -1 | -1 | 12 | 8 | 8 | 1.4 | 114421619 | 98192719 | tier1 | In-frame | 2924 | NA | 0.3826 |
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