Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-LP-A4AU-01A | TCGA-LP-A4AU | ABCA12|MICU1 | ABCA12 | MICU1 | 2 | 10 | -1 | -1 | 2 | 1 | 1 | 2.7 | 216002863 | 74326552 | tier3 | CDS-5UTR | 39 | NA | 0.34189 |
| ESCA | TCGA-VR-A8EU-01A | TCGA-VR-A8EU | ABCA12|SGPP2 | ABCA12 | SGPP2 | 2 | 2 | -1 | 1 | 4 | 22 | 19 | 3.8 | 215890397 | 223339287 | tier1 | In-frame | 40 | NA | 0.34387 |
| PRAD | TCGA-CH-5751-01A | TCGA-CH-5751 | RHBDD1|EFR3A | RHBDD1 | EFR3A | 2 | 8 | 1 | 1 | 2 | 1 | 1 | 1 | 227779067 | 132952746 | tier3 | In-frame | 14646 | NA | 0 |
| PRAD | TCGA-KK-A7AZ-01A | TCGA-KK-A7AZ | TRPM8|SLC4A4 | TRPM8 | SLC4A4 | 2 | 4 | 1 | 1 | 17 | 14 | 11 | 0.036 | 234905160 | 72306333 | tier1 | Out-of-frame | 18737 | NA | 0 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | TRPM8|RABEP1 | TRPM8 | RABEP1 | 2 | 17 | 1 | 1 | 2 | 49 | 31 | 1.1 | 234928166 | 5283828 | tier4 | NA | 18736 | NA | 0 |
| LUAD | TCGA-MP-A4TK-01A | TCGA-MP-A4TK | ITGA9|SEC13 | ITGA9 | SEC13 | 3 | 3 | 1 | -1 | 197 | 115 | 102 | 0.45 | 37792060 | 10347376 | tier1 | In-frame | 8388 | NA | 0.37195 |
| PRAD | TCGA-VN-A88P-01A | TCGA-VN-A88P | ITGA9|HMOX2 | ITGA9 | HMOX2 | 3 | 16 | 1 | 1 | 3 | 4 | 4 | 0.15 | 37584076 | 4533638 | tier1 | CDS-5UTR | 8387 | NA | 0.37021 |
| TGCT | TCGA-YU-AA4L-01A | TCGA-YU-AA4L | ITGA9|ZNF48 | ITGA9 | ZNF48 | 3 | 16 | 1 | 1 | 6 | 9 | 9 | 3.2 | 37584076 | 30407101 | tier1 | NA | 8389 | NA | 0.36911 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 0.043 | 62063932 | 59908140 | tier3 | In-frame | 13861 | NA | 0.36774 |
| LIHC | TCGA-RC-A6M4-01A | TCGA-RC-A6M4 | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 4 | 2 | 2 | 0.043 | 61734656 | 60807705 | tier1 | CDS-5UTR | 13862 | NA | 0.36774 |
| LUSC | TCGA-70-6722-01A | TCGA-70-6722 | PTPRG|MCM3AP | PTPRG | MCM3AP | 3 | 21 | 1 | -1 | 12 | 8 | 8 | 0.048 | 61734656 | 47703752 | tier1 | In-frame | 13865 | NA | 0.36037 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 37 | 48 | 41 | 0.043 | 61734656 | 60522712 | tier1 | CDS-5UTR | 13863 | NA | 0.36774 |
| PRAD | TCGA-HC-A9TH-01A | TCGA-HC-A9TH | PTPRG|FRMD4B | PTPRG | FRMD4B | 3 | 3 | 1 | -1 | 7 | 7 | 7 | 0.49 | 61734656 | 69225807 | tier1 | In-frame | 13864 | NA | 0.35972 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | PTPRG|CLASP2 | PTPRG | CLASP2 | 3 | 3 | 1 | -1 | 4 | 1 | 1 | 0.19 | 61989171 | 33543260 | tier2 | In-frame | 13859 | NA | 0.36396 |
| SKCM | TCGA-D3-A3C6-06A | TCGA-D3-A3C6 | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 0.043 | 61734656 | 60522712 | tier4 | CDS-5UTR | 13860 | NA | 0.36774 |
| SKCM | TCGA-EB-A24D-01A | TCGA-EB-A24D | PTPRG|SYNPR | PTPRG | SYNPR | 3 | 3 | 1 | 1 | 40 | 26 | 23 | 3 | 61734656 | 63466508 | tier1 | Out-of-frame | 13866 | validated | 0.36134 |
| KIRC | TCGA-B8-4143-01A | TCGA-B8-4143 | SLC25A26|FAM19A1 | SLC25A26 | FAM19A1 | 3 | 3 | 1 | 1 | 5 | 2 | 2 | 0.96 | 66396832 | 68587907 | tier1 | Out-of-frame | 16104 | NA | 0 |
| GBM | TCGA-41-4097-01A | TCGA-41-4097 | SLC25A26|IMMT | SLC25A26 | IMMT | 3 | 2 | 1 | -1 | 5 | 23 | 20 | 1.4 | 66313803 | 86374956 | tier1 | In-frame | 16105 | NA | 0 |
| PAAD | TCGA-FB-AAQ1-01A | TCGA-FB-AAQ1 | IGSF11|UPK1B | IGSF11 | UPK1B | 3 | 3 | -1 | 1 | 2 | 2 | 2 | 0.077 | 118753378 | 118905561 | tier3 | CDS-5UTR | 8128 | NA | 0.34512 |
| KIRC | TCGA-BP-4963-01A | TCGA-BP-4963 | TRPC1|PTPRG | TRPC1 | PTPRG | 3 | 3 | 1 | 1 | 2 | 1 | 1 | 1.4 | 142467302 | 61734552 | tier4 | Out-of-frame | 18717 | NA | 0 |
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