TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BLCA	TCGA-FD-A6TC-01A	TCGA-FD-A6TC	CDC42BPA\|WWOX	CDC42BPA	WWOX	1	16	-1	1	5	8	7	0.15	227504706	79245505	tier1	In-frame	3337	NA	0.38102
PRAD	TCGA-EJ-5499-01A	TCGA-EJ-5499	CDC42BPA\|ZNF678	CDC42BPA	ZNF678	1	1	-1	1	2	1	1	0.98	227504706	227770215	tier3	Out-of-frame	3338	NA	0.37103
BRCA	TCGA-E2-A14R-01A	TCGA-E2-A14R	MBOAT2\|ARHGAP25	MBOAT2	ARHGAP25	2	2	-1	1	8	2	2	2.9	9013238	69002353	tier1	In-frame	10060	NA	0.33932
PRAD	TCGA-EJ-A7NM-01A	TCGA-EJ-A7NM	MBOAT2\|BRAT1	MBOAT2	BRAT1	2	7	-1	-1	3	2	2	2.8	9143669	2587112	tier1	Out-of-frame	10061	NA	0.32608
LIHC	TCGA-DD-A11C-01A	TCGA-DD-A11C	EPHX1\|RAD51B	EPHX1	RAD51B	1	14	1	1	60	43	41	0.047	226032324	69061202	tier1	Out-of-frame	5681	NA	0.32798
LIHC	TCGA-CC-A7IL-01A	TCGA-CC-A7IL	EPHX1\|SEC63	EPHX1	SEC63	1	6	1	-1	2	255	113	1.4	226033260	108214782	tier2	NA	5682	NA	0.3488
HNSC	TCGA-QK-A8ZB-01A	TCGA-QK-A8ZB	PDIA6\|DKK3	PDIA6	DKK3	2	11	-1	-1	22	36	31	0.88	10952804	11990034	tier4	Out-of-frame	12547	NA	0.35092
SARC	TCGA-K1-A3PO-01A	TCGA-K1-A3PO	CALM2\|TTC7A	CALM2	TTC7A	2	2	-1	1	21	10	10	0.83	47397873	47233061	tier1	Out-of-frame	2909	NA	0.38181
BRCA	TCGA-AR-A0U0-01A	TCGA-AR-A0U0	ASXL2\|FKBP8	ASXL2	FKBP8	2	19	-1	-1	18	25	24	0.56	26058407	18652805	tier1	CDS-5UTR	1562	NA	0.37894
LUSC	TCGA-90-7769-01A	TCGA-90-7769	ASXL2\|MINPP1	ASXL2	MINPP1	2	10	-1	1	8	6	6	0.018	26068350	89272881	tier1	Out-of-frame	1565	NA	0.35327
ACC	TCGA-OR-A5J2-01A	TCGA-OR-A5J2	ASXL2\|PPWD1	ASXL2	PPWD1	2	5	-1	1	11	2	2	0.69	26029098	64863340	tier1	Out-of-frame	1567	NA	0.35807
BRCA	TCGA-AR-A24H-01A	TCGA-AR-A24H	ASXL2\|HSPH1	ASXL2	HSPH1	2	13	-1	-1	13	8	7	0.027	26101035	31733000	tier1	Out-of-frame	1563	NA	0.373
PRAD	TCGA-HC-A6AN-01A	TCGA-HC-A6AN	ASXL2\|MORC3	ASXL2	MORC3	2	21	-1	1	3	3	3	0.39	26101035	37744672	tier1	In-frame	1566	NA	0.3562
BRCA	TCGA-AN-A0FJ-01A	TCGA-AN-A0FJ	ASXL2\|KIF3C	ASXL2	KIF3C	2	2	-1	-1	3	3	3	0.14	26101035	26179313	tier1	In-frame	1564	NA	0.36222
LUAD	TCGA-44-7670-01A	TCGA-44-7670	ASXL2\|SRBD1	ASXL2	SRBD1	2	2	-1	-1	69	90	68	1.2	26101035	45715470	tier1	Out-of-frame	1568	NA	0.35503
PRAD	TCGA-KK-A8IM-01A	TCGA-KK-A8IM	ASXL2\|C2orf44	ASXL2	C2orf44	2	2	-1	-1	2	1	1	0.1	26058407	24262382	tier3	CDS-5UTR	1560	NA	0
UCEC	TCGA-PG-A915-01A	TCGA-PG-A915	ASXL2\|DENND2A	ASXL2	DENND2A	2	7	-1	-1	35	23	20	4.2	26101035	140302342	tier1	CDS-5UTR	1561	NA	0.35782
SARC	TCGA-DX-A8BK-01A	TCGA-DX-A8BK	SLC20A1\|ARRDC5	SLC20A1	ARRDC5	2	19	1	-1	6	2	2	0.2	113405315	4896888	tier1	Out-of-frame	16054	NA	0
PRAD	TCGA-ZG-A9NI-01A	TCGA-ZG-A9NI	TMEFF2\|RLIM	TMEFF2	RLIM	2	X	-1	-1	3	4	3	0.023	193044394	73815835	tier1	CDS-5UTR	17920	NA	0
LUAD	TCGA-55-6969-01A	TCGA-55-6969	METTL21A\|PLEKHM3	METTL21A	PLEKHM3	2	2	-1	-1	2	2	2	7.7	208486530	208693220	tier2	Out-of-frame	10271	NA	0.33703

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