Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-D3-A2JB-06A | TCGA-D3-A2JB | SMYD2|LPGAT1 | SMYD2 | LPGAT1 | 1 | 1 | 1 | -1 | 6 | 4 | 3 | 0.46 | 214498051 | 211924409 | tier1 | In-frame | 16459 | NA | 0 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | DUSP10|SUSD4 | DUSP10 | SUSD4 | 1 | 1 | -1 | -1 | 8 | 18 | 15 | 0.008 | 221912276 | 223442017 | tier1 | In-frame | 5176 | NA | 0.37377 |
| PRAD | TCGA-XJ-A9DX-01A | TCGA-XJ-A9DX | ATP8B2|ADAR | ATP8B2 | ADAR | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 1.4 | 154313538 | 154569743 | tier2 | Out-of-frame | 1770 | NA | 0.35477 |
| KIRC | TCGA-AS-3777-01A | TCGA-AS-3777 | ADAM15|DCST1 | ADAM15 | DCST1 | 1 | 1 | 1 | 1 | 17 | 17 | 17 | 0.02 | 155025253 | 155006448 | tier1 | CDS-5UTR | 408 | NA | 0.37305 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | ADAM15|DCST1 | ADAM15 | DCST1 | 1 | 1 | 1 | 1 | 40 | 21 | 18 | 0.02 | 155025253 | 155006448 | tier1 | CDS-5UTR | 409 | NA | 0.37305 |
| PAAD | TCGA-2J-AABK-01A | TCGA-2J-AABK | ADAM15|CHD1L | ADAM15 | CHD1L | 1 | 1 | 1 | 1 | 6 | 30 | 26 | 3.8 | 155032450 | 146739085 | tier1 | In-frame | 407 | NA | 0.37665 |
| HNSC | TCGA-CV-5970-01A | TCGA-CV-5970 | S100A8|SUPT16H | S100A8 | SUPT16H | 1 | 14 | -1 | -1 | 2 | 9 | 2 | 1 | 153362508 | 21829491 | tier3 | 3UTR-CDS | 15246 | NA | 0 |
| CESC | TCGA-VS-A8QF-01A | TCGA-VS-A8QF | S100A8|CCT5 | S100A8 | CCT5 | 1 | 5 | -1 | 1 | 2 | 266 | 212 | 100 | 153362508 | 10250033 | tier3 | 3UTR-5UTR | 15243 | NA | 0 |
| ESCA | TCGA-IG-A5B8-01A | TCGA-IG-A5B8 | S100A8|TNNT1 | S100A8 | TNNT1 | 1 | 19 | -1 | -1 | 2 | 43 | 3 | 100 | 153362508 | 55646910 | tier4 | NA | 15247 | NA | 0 |
| HNSC | TCGA-CV-7183-01A | TCGA-CV-7183 | S100A8|MYO6 | S100A8 | MYO6 | 1 | 6 | -1 | 1 | 2 | 2 | 1 | 1.9 | 153362508 | 76595721 | tier4 | 3UTR-CDS | 15245 | NA | 0 |
| LUSC | TCGA-77-7337-01A | TCGA-77-7337 | S100A8|FADS2 | S100A8 | FADS2 | 1 | 11 | -1 | 1 | 2 | 25 | 1 | 0.23 | 153362508 | 61588853 | tier4 | 3UTR-CDS | 15244 | NA | 0 |
| BRCA | TCGA-A2-A0CW-01A | TCGA-A2-A0CW | KCNN3|DCST2 | KCNN3 | DCST2 | 1 | 1 | -1 | -1 | 8 | 10 | 9 | 0.88 | 154794565 | 154999191 | tier1 | Out-of-frame | 8596 | NA | 0.34103 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | KCNN3|YEATS4 | KCNN3 | YEATS4 | 1 | 12 | -1 | 1 | 96 | 47 | 46 | 100 | 154705479 | 69756568 | tier1 | In-frame | 8597 | non-validated | 0.35503 |
| BRCA | TCGA-A8-A079-01A | TCGA-A8-A079 | GALNT2|KIF26B | GALNT2 | KIF26B | 1 | 1 | 1 | 1 | 20 | 8 | 8 | 0.33 | 230339036 | 245847535 | tier1 | In-frame | 6926 | NA | 0.35815 |
| SKCM | TCGA-D3-A51E-06A | TCGA-D3-A51E | GALNT2|RGS7 | GALNT2 | RGS7 | 1 | 1 | 1 | -1 | 4 | 4 | 2 | 1.4 | 230203153 | 241146429 | tier1 | Out-of-frame | 6927 | NA | 0.37123 |
| BRCA | TCGA-AO-A0J2-01A | TCGA-AO-A0J2 | ITPKB|ZC3HAV1 | ITPKB | ZC3HAV1 | 1 | 7 | -1 | -1 | 9 | 11 | 9 | 0.45 | 226923228 | 138749745 | tier1 | In-frame | 8441 | validated | 0.36972 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | CDC42BPA|C5 | CDC42BPA | C5 | 1 | 9 | -1 | -1 | 3 | 3 | 3 | 0.61 | 227504706 | 123780130 | tier1 | Out-of-frame | 3334 | NA | 0.3733 |
| BRCA | TCGA-E2-A1LK-01A | TCGA-E2-A1LK | CDC42BPA|EPRS | CDC42BPA | EPRS | 1 | 1 | -1 | -1 | 6 | 5 | 4 | 2 | 227203781 | 220180680 | tier1 | In-frame | 3335 | non-validated | 0.37343 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | CDC42BPA|ATP6V1G3 | CDC42BPA | ATP6V1G3 | 1 | 1 | -1 | -1 | 2 | 1 | 1 | 0.074 | 227441765 | 198492694 | tier3 | In-frame | 3333 | NA | 0.3667 |
| HNSC | TCGA-CV-7407-01A | TCGA-CV-7407 | CDC42BPA|PRKG1 | CDC42BPA | PRKG1 | 1 | 10 | -1 | 1 | 3 | 1 | 1 | 0.22 | 227268594 | 52912924 | tier3 | In-frame | 3336 | NA | 0.38127 |
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