Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-OL-A5D8-01A | TCGA-OL-A5D8 | SETDB1|CD46 | SETDB1 | CD46 | 1 | 1 | 1 | 1 | 19 | 13 | 13 | 0.15 | 150923957 | 207930359 | tier1 | Out-of-frame | 15711 | NA | 0 |
| BRCA | TCGA-E2-A1LK-01A | TCGA-E2-A1LK | SETDB1|PKP4 | SETDB1 | PKP4 | 1 | 2 | 1 | 1 | 6 | 3 | 3 | 0.075 | 150915164 | 159477502 | tier1 | In-frame | 15712 | non-validated | 0 |
| LUAD | TCGA-86-8672-01A | TCGA-86-8672 | SETDB1|PLEKHO1 | SETDB1 | PLEKHO1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.32 | 150902594 | 150128260 | tier2 | Out-of-frame | 15713 | NA | 0 |
| OV | TCGA-24-1469-01A | TCGA-24-1469 | MCL1|CTSS | MCL1 | CTSS | 1 | 1 | -1 | -1 | 13 | 7 | 7 | 0.16 | 150551319 | 150720355 | tier1 | In-frame | 10095 | NA | 0.37467 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | MCL1|AR | MCL1 | AR | 1 | X | -1 | 1 | 2 | 4 | 1 | 0.4 | 150547032 | 66914515 | tier3 | 3UTR-CDS | 10094 | NA | 0.38352 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | PI4KB|SELENBP1 | PI4KB | SELENBP1 | 1 | 1 | -1 | -1 | 51 | 23 | 18 | 0.95 | 151298648 | 151342245 | tier1 | Out-of-frame | 12787 | NA | 0.3618 |
| CESC | TCGA-VS-A950-01A | TCGA-VS-A950 | PI4KB|SELENBP1 | PI4KB | SELENBP1 | 1 | 1 | -1 | -1 | 129 | 34 | 32 | 0.95 | 151288049 | 151342245 | tier1 | Out-of-frame | 12788 | NA | 0.3618 |
| LUAD | TCGA-86-A4P7-01A | TCGA-86-A4P7 | PI4KB|SYT11 | PI4KB | SYT11 | 1 | 1 | -1 | 1 | 14 | 1 | 1 | 2.6 | 151299747 | 155850291 | tier4 | 5UTR-CDS | 12789 | NA | 0.35991 |
| LUSC | TCGA-66-2754-01A | TCGA-66-2754 | PIP5K1A|SLC20A2 | PIP5K1A | SLC20A2 | 1 | 8 | 1 | -1 | 6 | 1 | 1 | 1.7 | 151171557 | 42330172 | tier2 | CDS-5UTR | 12872 | NA | 0.36856 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | PIP5K1A|MLLT11 | PIP5K1A | MLLT11 | 1 | 1 | 1 | 1 | 191 | 163 | 151 | 0.16 | 151171557 | 151039695 | tier1 | CDS-5UTR | 12871 | non-validated | 0.36779 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | PIP5K1A|C1orf56 | PIP5K1A | C1orf56 | 1 | 1 | 1 | 1 | 6 | 7 | 7 | 3.4 | 151199876 | 151022914 | tier1 | In-frame | 12870 | NA | 0 |
| LUSC | TCGA-39-5024-01A | TCGA-39-5024 | PIP5K1A|TNFAIP8L2 | PIP5K1A | TNFAIP8L2 | 1 | 1 | 1 | 1 | 3 | 4 | 4 | 0.55 | 151171557 | 151131142 | tier4 | CDS-5UTR | 12873 | NA | 0.37019 |
| LUAD | TCGA-78-7146-01A | TCGA-78-7146 | ARNT|F5 | ARNT | F5 | 1 | 1 | -1 | -1 | 6 | 8 | 8 | 1.2 | 150825238 | 169494146 | tier1 | Out-of-frame | 1426 | non-validated | 0.38313 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | ARNT|RIIAD1 | ARNT | RIIAD1 | 1 | 1 | -1 | 1 | 20 | 67 | 65 | 1.1 | 150849019 | 151685945 | tier2 | CDS-5UTR | 1427 | NA | 0.36944 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | ARNT|RP11-126K1.2 | ARNT | RP11-126K1.2 | 1 | 1 | -1 | -1 | 4 | 9 | 7 | 100 | 150807014 | 151252734 | tier1 | Out-of-frame | 1428 | NA | 0.36944 |
| BRCA | TCGA-EW-A6SA-01A | TCGA-EW-A6SA | KCNH1|LPGAT1 | KCNH1 | LPGAT1 | 1 | 1 | -1 | -1 | 11 | 5 | 5 | 0.86 | 211192206 | 212002665 | tier1 | CDS-5UTR | 8574 | NA | 0.35544 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | TAF1A|SLC12A7 | TAF1A | SLC12A7 | 1 | 5 | -1 | -1 | 2 | 1 | 1 | 1.2 | 222757470 | 1085588 | tier3 | In-frame | 17319 | NA | 0 |
| BLCA | TCGA-XF-AAMT-01A | TCGA-XF-AAMT | SMYD2|PTP4A1 | SMYD2 | PTP4A1 | 1 | 6 | 1 | 1 | 4 | 2 | 2 | 0.95 | 214454770 | 64286341 | tier1 | CDS-5UTR | 16462 | NA | 0 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | SMYD2|PROX1 | SMYD2 | PROX1 | 1 | 1 | 1 | 1 | 14 | 19 | 18 | 0.47 | 214501067 | 214208992 | tier1 | In-frame | 16461 | NA | 0 |
| LUSC | TCGA-56-A4ZK-01A | TCGA-56-A4ZK | SMYD2|PGBD2 | SMYD2 | PGBD2 | 1 | 1 | 1 | 1 | 6 | 5 | 5 | 100 | 214454770 | 249208015 | tier1 | CDS-5UTR | 16460 | NA | 0 |
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