Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | GPR161|EFTUD1 | GPR161 | EFTUD1 | 1 | 15 | -1 | -1 | 2 | 2 | 2 | 0.35 | 168105248 | 82523312 | tier2 | 5UTR-CDS | 7371 | NA | 0.35466 |
| SARC | TCGA-X6-A8C2-01A | TCGA-X6-A8C2 | ALDH9A1|MGST3 | ALDH9A1 | MGST3 | 1 | 1 | -1 | 1 | 15 | 24 | 21 | 1.2 | 165648679 | 165619078 | tier1 | CDS-5UTR | 809 | NA | 0.34518 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | ALDH9A1|NME7 | ALDH9A1 | NME7 | 1 | 1 | -1 | -1 | 25 | 25 | 23 | 0.55 | 165651344 | 169206925 | tier1 | In-frame | 810 | NA | 0.36029 |
| LUAD | TCGA-44-2656-01A | TCGA-44-2656 | ATP1B1|SIAE | ATP1B1 | SIAE | 1 | 11 | 1 | -1 | 2 | 2 | 1 | 0.043 | 169101960 | 124543777 | tier2 | 3UTR-5UTR | 1699 | non-validated | 0.35356 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | ATP1B1|IL26 | ATP1B1 | IL26 | 1 | 12 | 1 | -1 | 4 | 2 | 2 | 1.2 | 169080736 | 68619063 | tier1 | Out-of-frame | 1696 | non-validated | 0.35525 |
| PAAD | TCGA-3A-A9I5-01A | TCGA-3A-A9I5 | ATP1B1|NRG1 | ATP1B1 | NRG1 | 1 | 8 | 1 | 1 | 58 | 65 | 62 | 0.002 | 169080736 | 32453346 | tier1 | In-frame | 1697 | NA | 0.37945 |
| LIHC | TCGA-DD-A4NA-01A | TCGA-DD-A4NA | ATP1B1|THSD4 | ATP1B1 | THSD4 | 1 | 15 | 1 | 1 | 2 | 1 | 1 | 0.07 | 169101960 | 72072881 | tier3 | 3UTR-CDS | 1700 | non-validated | 0.35863 |
| LUAD | TCGA-86-8281-01A | TCGA-86-8281 | ATP1B1|RCSD1 | ATP1B1 | RCSD1 | 1 | 1 | 1 | 1 | 285 | 302 | 277 | 0.083 | 169099328 | 167653137 | tier1 | In-frame | 1698 | NA | 0.35868 |
| SKCM | TCGA-EE-A2ML-06A | TCGA-EE-A2ML | RXRG|FAM78B | RXRG | FAM78B | 1 | 1 | -1 | -1 | 12 | 6 | 6 | 0.4 | 165386278 | 166040000 | tier1 | Out-of-frame | 15210 | NA | 0 |
| LUAD | TCGA-49-AARQ-01A | TCGA-49-AARQ | PVRL4|PFDN2 | PVRL4 | PFDN2 | 1 | 1 | -1 | -1 | 21 | 23 | 23 | 0.29 | 161059008 | 161072165 | tier1 | Out-of-frame | 13977 | NA | 0 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | FCGR2A|SPTA1 | FCGR2A | SPTA1 | 1 | 1 | 1 | -1 | 4 | 6 | 6 | 2.5 | 161476381 | 158632735 | tier1 | Out-of-frame | 6381 | NA | 0.37944 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | USP21|PVRL4 | USP21 | PVRL4 | 1 | 1 | 1 | -1 | 4 | 2 | 1 | 0.024 | 161134040 | 161042675 | tier3 | In-frame | 19323 | non-validated | 0 |
| BLCA | TCGA-K4-A4AC-01A | TCGA-K4-A4AC | ABL2|XRRA1 | ABL2 | XRRA1 | 1 | 11 | -1 | -1 | 3 | 2 | 1 | 0.71 | 179198376 | 74559507 | tier4 | Out-of-frame | 116 | NA | 0.38448 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | HMCN1|RNF2 | HMCN1 | RNF2 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 0.055 | 185704179 | 185060711 | tier2 | Out-of-frame | 7850 | validated | 0.37209 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | HMCN1|ZSWIM4 | HMCN1 | ZSWIM4 | 1 | 19 | 1 | 1 | 3 | 1 | 1 | 0.81 | 186052093 | 13910534 | tier2 | Out-of-frame | 7851 | non-validated | 0.35448 |
| COAD | TCGA-A6-5660-01A | TCGA-A6-5660 | TUFT1|MLL5 | TUFT1 | MLL5 | 1 | 7 | 1 | 1 | 2 | 3 | 3 | 0.22 | 151538704 | 104749389 | tier3 | In-frame | 18955 | NA | 0 |
| SARC | TCGA-DX-A23U-01A | TCGA-DX-A23U | TUFT1|PKN2 | TUFT1 | PKN2 | 1 | 1 | 1 | 1 | 13 | 5 | 5 | 2.4 | 151512902 | 89206671 | tier1 | In-frame | 18956 | NA | 0 |
| HNSC | TCGA-CV-7261-01A | TCGA-CV-7261 | TUFT1|CGN | TUFT1 | CGN | 1 | 1 | 1 | 1 | 14 | 6 | 5 | 0.046 | 151512902 | 151509206 | tier1 | In-frame | 18953 | NA | 0 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | TUFT1|CGN | TUFT1 | CGN | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 0.046 | 151512902 | 151490982 | tier3 | CDS-5UTR | 18954 | NA | 0 |
| LUAD | TCGA-44-6775-01A | TCGA-44-6775 | TUFT1|CGN | TUFT1 | CGN | 1 | 1 | 1 | 1 | 10 | 8 | 8 | 0.046 | 151537090 | 151492642 | tier1 | In-frame | 18952 | non-validated | 0 |
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