Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | ADC|PHIP | ADC | PHIP | 1 | 6 | 1 | -1 | 6 | 4 | 3 | 1.6 | 33563780 | 79713575 | tier1 | In-frame | 461 | NA | 0.3607 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | PTPRF|PDE4B | PTPRF | PDE4B | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 1.3 | 44019612 | 66378928 | tier2 | CDS-5UTR | 13858 | NA | 0.37796 |
| READ | TCGA-AF-2693-01A | TCGA-AF-2693 | PTPRF|DHRS4L2 | PTPRF | DHRS4L2 | 1 | 14 | 1 | 1 | 8 | 18 | 16 | 0.009 | 44064584 | 24464241 | tier1 | In-frame | 13854 | NA | 0.38063 |
| BRCA | TCGA-BH-A1F0-01A | TCGA-BH-A1F0 | PTPRF|GUCA2A | PTPRF | GUCA2A | 1 | 1 | 1 | -1 | 46 | 39 | 37 | 0.53 | 44019612 | 42629281 | tier1 | Out-of-frame | 13855 | NA | 0.37786 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | PTPRF|HIVEP3 | PTPRF | HIVEP3 | 1 | 1 | 1 | -1 | 5 | 10 | 8 | 0.28 | 44003948 | 42166666 | tier1 | 5UTR-5UTR | 13856 | NA | 0.38564 |
| CESC | TCGA-IR-A3LH-01A | TCGA-IR-A3LH | PTPRF|NDUFV1 | PTPRF | NDUFV1 | 1 | 11 | 1 | 1 | 2 | 11 | 11 | 0.13 | 44089334 | 67375697 | tier3 | NA | 13857 | NA | 0.37956 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | PTPRF|C1orf222 | PTPRF | C1orf222 | 1 | 1 | 1 | -1 | 35 | 18 | 16 | 0.11 | 44003948 | 1861775 | tier1 | NA | 13853 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | MTF2|BRDT | MTF2 | BRDT | 1 | 1 | 1 | 1 | 3 | 12 | 12 | 0.54 | 93545088 | 92469971 | tier1 | Out-of-frame | 10787 | non-validated | 0.36615 |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | MTF2|GPSM2 | MTF2 | GPSM2 | 1 | 1 | 1 | 1 | 18 | 8 | 6 | 0.14 | 93545088 | 109427897 | tier1 | CDS-5UTR | 10789 | NA | 0.37167 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | MTF2|RPL5 | MTF2 | RPL5 | 1 | 1 | 1 | 1 | 22 | 38 | 38 | 4.2 | 93581175 | 93306108 | tier1 | Out-of-frame | 10790 | non-validated | 0.37339 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | MTF2|CTNND2 | MTF2 | CTNND2 | 1 | 5 | 1 | -1 | 21 | 11 | 10 | 0.81 | 93545088 | 11199773 | tier1 | Out-of-frame | 10788 | NA | 0.3818 |
| LUSC | TCGA-37-A5EN-01A | TCGA-37-A5EN | SLC44A3|ABCD3 | SLC44A3 | ABCD3 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.3 | 95332973 | 94940699 | tier2 | In-frame | 16232 | NA | 0 |
| LUAD | TCGA-55-6978-01A | TCGA-55-6978 | PSMA5|FOXP1 | PSMA5 | FOXP1 | 1 | 3 | -1 | -1 | 2 | 1 | 1 | 3 | 109944470 | 71007472 | tier4 | NA | 13710 | NA | 0.37101 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | CELSR2|KIAA1324 | CELSR2 | KIAA1324 | 1 | 1 | 1 | 1 | 4 | 3 | 3 | 0.37 | 109816292 | 109704516 | tier1 | Out-of-frame | 3515 | non-validated | 0.35717 |
| BRCA | TCGA-BH-A208-01A | TCGA-BH-A208 | CELSR2|SARS | CELSR2 | SARS | 1 | 1 | 1 | 1 | 20 | 21 | 20 | 2.5 | 109816292 | 109780353 | tier1 | Out-of-frame | 3519 | NA | 0.35907 |
| LUSC | TCGA-56-A4BY-01A | TCGA-56-A4BY | CELSR2|FAR1 | CELSR2 | FAR1 | 1 | 11 | 1 | 1 | 2 | 2 | 2 | 0.63 | 109818372 | 13744912 | tier4 | NA | 3514 | NA | 0.36404 |
| UCEC | TCGA-AX-A3G4-01A | TCGA-AX-A3G4 | CELSR2|KIAA1324 | CELSR2 | KIAA1324 | 1 | 1 | 1 | 1 | 9 | 8 | 8 | 0.37 | 109805066 | 109704516 | tier1 | Out-of-frame | 3516 | NA | 0.35717 |
| UCEC | TCGA-A5-A2K4-01A | TCGA-A5-A2K4 | CELSR2|SARS | CELSR2 | SARS | 1 | 1 | 1 | 1 | 13 | 11 | 6 | 2.5 | 109816292 | 109773500 | tier1 | Out-of-frame | 3518 | NA | 0.35907 |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | CELSR2|KIAA1324 | CELSR2 | KIAA1324 | 1 | 1 | 1 | 1 | 22 | 22 | 19 | 0.37 | 109796011 | 109707121 | tier2 | In-frame | 3517 | NA | 0.35717 |
| SARC | TCGA-PC-A5DO-01A | TCGA-PC-A5DO | ITGA10|PEX11B | ITGA10 | PEX11B | 1 | 1 | 1 | 1 | 3 | 2 | 2 | 0.093 | 145531026 | 145522514 | tier1 | In-frame | 8371 | NA | 0.35622 |
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