Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | SAE1|RPA2 | SAE1 | RPA2 | 19 | 1 | 1 | -1 | 7 | 7 | 6 | 0.16 | 47658470 | 28233793 | tier1 | In-frame | 15267 | NA | 0 |
| CESC | TCGA-IR-A3LH-01A | TCGA-IR-A3LH | LMTK3|NOSIP | LMTK3 | NOSIP | 19 | 19 | -1 | -1 | 5 | 4 | 4 | 0.67 | 49000650 | 50063949 | tier1 | CDS-5UTR | 9411 | NA | 0.35962 |
| STAD | TCGA-CD-8527-01A | TCGA-CD-8527 | LMTK3|DBP | LMTK3 | DBP | 19 | 19 | -1 | -1 | 2 | 12 | 11 | 0.024 | 48994365 | 49134309 | tier2 | Out-of-frame | 9410 | NA | 0.3601 |
| BRCA | TCGA-AC-A2B8-01A | TCGA-AC-A2B8 | ADAMTS10|MLLT1 | ADAMTS10 | MLLT1 | 19 | 19 | -1 | -1 | 29 | 20 | 18 | 0.016 | 8665812 | 6270770 | tier1 | In-frame | 427 | NA | 0.36428 |
| LUSC | TCGA-43-6771-01A | TCGA-43-6771 | CARM1|OLFM2 | CARM1 | OLFM2 | 19 | 19 | 1 | -1 | 2 | 3 | 3 | 0.68 | 10982598 | 9971470 | tier2 | Out-of-frame | 2998 | NA | 0.3678 |
| PRAD | TCGA-KK-A6DY-01A | TCGA-KK-A6DY | CARM1|CASP14 | CARM1 | CASP14 | 19 | 19 | 1 | 1 | 2 | 2 | 2 | 1.2 | 11027173 | 15163017 | tier2 | CDS-5UTR | 2996 | NA | 0.36877 |
| ACC | TCGA-OR-A5K5-01A | TCGA-OR-A5K5 | CARM1|C19orf38 | CARM1 | C19orf38 | 19 | 19 | 1 | 1 | 26 | 44 | 40 | 0.4 | 10982598 | 10979894 | tier1 | Out-of-frame | 2995 | NA | 0 |
| COAD | TCGA-CM-6167-01A | TCGA-CM-6167 | CARM1|KLF11 | CARM1 | KLF11 | 19 | 2 | 1 | 1 | 2 | 3 | 2 | 0.43 | 10982598 | 10187777 | tier3 | Out-of-frame | 2997 | NA | 0.37576 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | CARM1|PLA2G4C | CARM1 | PLA2G4C | 19 | 19 | 1 | -1 | 16 | 47 | 11 | 0.27 | 10982598 | 48558306 | tier1 | Out-of-frame | 2999 | validated | 0.36252 |
| LUSC | TCGA-66-2737-01A | TCGA-66-2737 | CARM1|C19orf38 | CARM1 | C19orf38 | 19 | 19 | 1 | 1 | 4 | 1 | 1 | 0.4 | 10982598 | 10960935 | tier4 | In-frame | 2994 | NA | 0 |
| OV | TCGA-24-1548-01A | TCGA-24-1548 | CARM1|C19orf38 | CARM1 | C19orf38 | 19 | 19 | 1 | 1 | 36 | 13 | 13 | 0.4 | 10982598 | 10973846 | tier1 | In-frame | 2993 | non-validated | 0 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | RERE|SLC2A5 | RERE | SLC2A5 | 1 | 1 | -1 | -1 | 7 | 5 | 3 | 0.34 | 8877219 | 9107793 | tier1 | 5UTR-CDS | 14560 | NA | 0 |
| LUAD | TCGA-55-7576-01A | TCGA-55-7576 | RERE|SLC2A5 | RERE | SLC2A5 | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.34 | 8877219 | 9129653 | tier1 | 5UTR-5UTR | 14558 | NA | 0 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | RERE|SLC2A5 | RERE | SLC2A5 | 1 | 1 | -1 | -1 | 45 | 40 | 38 | 0.34 | 8555123 | 9118309 | tier1 | In-frame | 14559 | NA | 0 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | RERE|GPR157 | RERE | GPR157 | 1 | 1 | -1 | -1 | 7 | 9 | 8 | 0.12 | 8716032 | 9171548 | tier1 | Out-of-frame | 14556 | NA | 0 |
| LUAD | TCGA-55-7574-01A | TCGA-55-7574 | RERE|GPR157 | RERE | GPR157 | 1 | 1 | -1 | -1 | 20 | 8 | 7 | 0.12 | 8482787 | 9171548 | tier1 | Out-of-frame | 14555 | NA | 0 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | RERE|CYP4A11 | RERE | CYP4A11 | 1 | 1 | -1 | -1 | 5 | 3 | 3 | 0.72 | 8525985 | 47403809 | tier1 | In-frame | 14553 | NA | 0 |
| UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | RERE|SLC2A7 | RERE | SLC2A7 | 1 | 1 | -1 | -1 | 10 | 6 | 6 | 1.5 | 8716032 | 9079392 | tier1 | Out-of-frame | 14561 | NA | 0 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | RERE|ZSWIM5 | RERE | ZSWIM5 | 1 | 1 | -1 | -1 | 5 | 3 | 1 | 1.7 | 8525985 | 45553909 | tier3 | Out-of-frame | 14566 | NA | 0 |
| LGG | TCGA-DU-8166-01A | TCGA-DU-8166 | RERE|VAMP3 | RERE | VAMP3 | 1 | 1 | -1 | 1 | 13 | 14 | 14 | 0.63 | 8482787 | 7833502 | tier1 | In-frame | 14563 | NA | 0 |
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