Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-G4-6626-01A | TCGA-G4-6626 | COL6A1|CLCN3 | COL6A1 | CLCN3 | 21 | 4 | 1 | 1 | 2 | 9 | 8 | 100 | 47424962 | 170623929 | tier4 | NA | 4040 | NA | 0.3704 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | SOD1|TYK2 | SOD1 | TYK2 | 21 | 19 | 1 | -1 | 2 | 20 | 16 | 1.8 | 33040986 | 10491352 | tier3 | 3UTR-5UTR | 16585 | NA | 0 |
| BLCA | TCGA-GD-A3OS-01A | TCGA-GD-A3OS | COL6A2|DDX27 | COL6A2 | DDX27 | 21 | 20 | 1 | 1 | 2 | 30 | 14 | 4 | 47552763 | 47849303 | tier3 | NA | 4043 | NA | 0.36507 |
| HNSC | TCGA-CR-7382-01A | TCGA-CR-7382 | COL6A2|ELK3 | COL6A2 | ELK3 | 21 | 12 | 1 | 1 | 2 | 1 | 1 | 0.15 | 47552763 | 96588323 | tier3 | 3UTR-5UTR | 4044 | non-validated | 0.37629 |
| PRAD | TCGA-KK-A8IH-01A | TCGA-KK-A8IH | COL6A2|FOXP1 | COL6A2 | FOXP1 | 21 | 3 | 1 | -1 | 2 | 3 | 2 | 0.88 | 47552763 | 71007472 | tier3 | NA | 4045 | NA | 0.36588 |
| HNSC | TCGA-CR-7372-01A | TCGA-CR-7372 | SIK1|HUNK | SIK1 | HUNK | 21 | 21 | -1 | 1 | 2 | 6 | 6 | 0.1 | 44845287 | 33312477 | tier4 | Out-of-frame | 15909 | NA | 0 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | SCYL1|TRPM8 | SCYL1 | TRPM8 | 11 | 2 | 1 | 1 | 2 | 1 | 1 | 0.54 | 65306175 | 234826043 | tier3 | 3UTR-5UTR | 15447 | NA | 0 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | SCYL1|FRMD8 | SCYL1 | FRMD8 | 11 | 11 | 1 | 1 | 19 | 8 | 8 | 0.1 | 65294588 | 65172335 | tier1 | In-frame | 15446 | NA | 0 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | APP|RCAN1 | APP | RCAN1 | 21 | 21 | -1 | -1 | 32 | 85 | 75 | 1.3 | 27484296 | 35896008 | tier1 | In-frame | 1151 | NA | 0.38188 |
| LGG | TCGA-HT-7610-01A | TCGA-HT-7610 | APP|EEA1 | APP | EEA1 | 21 | 12 | -1 | -1 | 2 | 1 | 1 | 0.1 | 27252862 | 93229203 | tier3 | NA | 1150 | NA | 0.38497 |
| SKCM | TCGA-ER-A42L-06A | TCGA-ER-A42L | APP|CCT8 | APP | CCT8 | 21 | 21 | -1 | -1 | 19 | 22 | 14 | 0.89 | 27542882 | 30442658 | tier1 | In-frame | 1149 | NA | 0.38269 |
| THCA | TCGA-DJ-A13S-01A | TCGA-DJ-A13S | APP|SEC63 | APP | SEC63 | 21 | 6 | -1 | -1 | 2 | 1 | 1 | 0.067 | 27252862 | 108214782 | tier3 | NA | 1152 | NA | 0.38188 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | AKT1|ANKS1A | AKT1 | ANKS1A | 14 | 6 | -1 | 1 | 2 | 17 | 15 | 0.25 | 105235689 | 34977682 | tier4 | NA | 756 | NA | 0.39116 |
| PRAD | TCGA-EJ-5532-01A | TCGA-EJ-5532 | SAE1|BAX | SAE1 | BAX | 19 | 19 | 1 | 1 | 78 | 51 | 49 | 1.5 | 47646862 | 49464067 | tier1 | In-frame | 15263 | NA | 0 |
| COAD | TCGA-D5-6533-01A | TCGA-D5-6533 | SAE1|FGF9 | SAE1 | FGF9 | 19 | 13 | 1 | 1 | 4 | 3 | 3 | 0.11 | 47646862 | 22275329 | tier2 | In-frame | 15264 | NA | 0 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | SAE1|GRIN2D | SAE1 | GRIN2D | 19 | 19 | 1 | 1 | 24 | 14 | 14 | 0.46 | 47634285 | 48945026 | tier1 | In-frame | 15265 | NA | 0 |
| BRCA | TCGA-C8-A26Z-01A | TCGA-C8-A26Z | SAE1|ZBTB45 | SAE1 | ZBTB45 | 19 | 19 | 1 | -1 | 12 | 19 | 13 | 0.74 | 47646862 | 59029040 | tier1 | In-frame | 15269 | NA | 0 |
| KIRC | TCGA-CZ-5468-01A | TCGA-CZ-5468 | SAE1|WDR18 | SAE1 | WDR18 | 19 | 19 | 1 | 1 | 78 | 49 | 46 | 0.48 | 47658470 | 994212 | tier1 | In-frame | 15268 | NA | 0 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | SAE1|HAS1 | SAE1 | HAS1 | 19 | 19 | 1 | -1 | 44 | 26 | 14 | 0.19 | 47634285 | 52223148 | tier1 | CDS-5UTR | 15266 | NA | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | SAE1|ARHGAP35 | SAE1 | ARHGAP35 | 19 | 19 | 1 | 1 | 8 | 25 | 24 | 2.8 | 47673180 | 47491246 | tier1 | In-frame | 15262 | NA | 0 |
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