TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
CESC	TCGA-DS-A7WF-01A	TCGA-DS-A7WF	ERBB2\|NEUROD2	ERBB2	NEUROD2	17	17	1	-1	266	143	118	0.043	37856564	37762857	tier1	CDS-5UTR	5721	NA	0.38549
CESC	TCGA-Q1-A73R-01A	TCGA-Q1-A73R	ERBB2\|PGAP3	ERBB2	PGAP3	17	17	1	-1	181	103	75	0.13	37851434	37830932	tier1	5UTR-CDS	5722	NA	0.38259
CESC	TCGA-Q1-A73R-01A	TCGA-Q1-A73R	ERBB2\|PPP1R1B	ERBB2	PPP1R1B	17	17	1	1	10759	25571	22613	3.8	37883800	37791860	tier1	In-frame	5726	NA	0.38487
COAD	TCGA-D5-6531-01A	TCGA-D5-6531	ERBB2\|DNAJC7	ERBB2	DNAJC7	17	17	1	-1	32	21	18	0.35	37844531	40134419	tier1	5UTR-CDS	5719	NA	0.39024
LIHC	TCGA-KR-A7K2-01A	TCGA-KR-A7K2	ERBB2\|PPP1R1B	ERBB2	PPP1R1B	17	17	1	1	13	12	11	3.8	37883800	37791860	tier1	In-frame	5724	NA	0.38487
LUSC	TCGA-56-A4BY-01A	TCGA-56-A4BY	ERBB2\|TCAP	ERBB2	TCAP	17	17	1	1	42	23	19	0.002	37872858	37821969	tier1	Out-of-frame	5731	NA	0.3839
PAAD	TCGA-LB-A7SX-01A	TCGA-LB-A7SX	ERBB2\|PPP1R1B	ERBB2	PPP1R1B	17	17	1	1	8	11	7	3.8	37883800	37791860	tier1	In-frame	5725	NA	0.38487
LUSC	TCGA-46-3767-01A	TCGA-46-3767	IGFBP4\|UTRN	IGFBP4	UTRN	17	6	1	1	2	1	1	0.97	38613983	144665237	tier3	NA	8118	NA	0.37293
STAD	TCGA-CG-4466-01A	TCGA-CG-4466	FKBP10\|KRT40	FKBP10	KRT40	17	17	1	-1	51	62	58	2.1	39969531	39138715	tier1	In-frame	6546	NA	0.35505
BRCA	TCGA-BH-A1FE-01A	TCGA-BH-A1FE	CACNA1A\|ZNF44	CACNA1A	ZNF44	19	19	-1	-1	6	2	1	1	13394081	12359493	tier2	CDS-3UTR	2852	NA	0.3747
CESC	TCGA-C5-A7X5-01A	TCGA-C5-A7X5	BRD4\|CSN2	BRD4	CSN2	19	4	-1	-1	4	83	76	0.016	15443101	70826725	tier1	5UTR-5UTR	2202	NA	0.37246
LIHC	TCGA-BC-A10R-01A	TCGA-BC-A10R	BRD4\|AKAP8L	BRD4	AKAP8L	19	19	-1	-1	3	46	38	0.39	15443101	15491423	tier1	5UTR-CDS	2200	NA	0.37449
PRAD	TCGA-EJ-8469-01A	TCGA-EJ-8469	BRD4\|AKAP8L	BRD4	AKAP8L	19	19	-1	-1	2	18	13	0.39	15443101	15514853	tier2	5UTR-CDS	2201	NA	0.37449
STAD	TCGA-HU-A4GH-01A	TCGA-HU-A4GH	BRD4\|ZC3H15	BRD4	ZC3H15	19	2	-1	1	4	92	85	0.11	15443101	187367223	tier1	5UTR-CDS	2203	NA	0.36801
BRCA	TCGA-A7-A13E-01A	TCGA-A7-A13E	SLC39A3\|PPAP2C	SLC39A3	PPAP2C	19	19	-1	-1	86	42	35	1.8	2737046	288171	tier1	Out-of-frame	16207	NA	0
GBM	TCGA-06-0125-01A	TCGA-06-0125	SLC39A3\|SGTA	SLC39A3	SGTA	19	19	-1	-1	10	28	26	0.07	2737046	2765283	tier1	Out-of-frame	16208	validated	0
SKCM	TCGA-DA-A1I0-06A	TCGA-DA-A1I0	SLC39A3\|DDX39A	SLC39A3	DDX39A	19	19	-1	-1	17	29	22	0.17	2737046	14522410	tier1	In-frame	16206	non-validated	0
KIRC	TCGA-CJ-5681-01A	TCGA-CJ-5681	HUNK\|MAMLD1	HUNK	MAMLD1	21	X	1	1	5	7	6	1.3	33246248	149638017	tier1	In-frame	8037	validated	0.37395
LUSC	TCGA-85-8666-01A	TCGA-85-8666	COL6A1\|EIF2AK2	COL6A1	EIF2AK2	21	2	1	-1	2	44	42	5.3	47424962	37342384	tier3	NA	4041	NA	0.38655
ACC	TCGA-PK-A5HA-01A	TCGA-PK-A5HA	COL6A1\|PLAT	COL6A1	PLAT	21	8	1	-1	2	36	31	0.41	47424962	42051245	tier3	NA	4042	NA	0.37555

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