Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-5525-01A | TCGA-EJ-5525 | TP53|KIAA0753 | TP53 | KIAA0753 | 17 | 17 | -1 | -1 | 25 | 22 | 20 | 0.13 | 7590695 | 6498373 | tier1 | 5UTR-CDS | 18469 | NA | 0 |
| SARC | TCGA-DX-A8BG-01A | TCGA-DX-A8BG | CSNK1D|ALDH3A2 | CSNK1D | ALDH3A2 | 17 | 17 | -1 | 1 | 4 | 2 | 2 | 0.081 | 80231182 | 19552248 | tier1 | CDS-5UTR | 4279 | NA | 0.38162 |
| LUSC | TCGA-66-2783-01A | TCGA-66-2783 | CSNK1D|SCPEP1 | CSNK1D | SCPEP1 | 17 | 17 | -1 | 1 | 47 | 29 | 27 | 1.7 | 80231182 | 55072868 | tier1 | Out-of-frame | 4282 | NA | 0.38085 |
| COAD | TCGA-AZ-6601-01A | TCGA-AZ-6601 | CSNK1D|SECTM1 | CSNK1D | SECTM1 | 17 | 17 | -1 | -1 | 24 | 27 | 25 | 0.57 | 80223562 | 80280887 | tier1 | In-frame | 4284 | non-validated | 0.38008 |
| HNSC | TCGA-CV-5440-01A | TCGA-CV-5440 | CSNK1D|SECTM1 | CSNK1D | SECTM1 | 17 | 17 | -1 | -1 | 5 | 1 | 1 | 0.57 | 80231182 | 80285168 | tier3 | CDS-5UTR | 4285 | NA | 0.38008 |
| UCEC | TCGA-AJ-A3EJ-01A | TCGA-AJ-A3EJ | CSNK1D|SECTM1 | CSNK1D | SECTM1 | 17 | 17 | -1 | -1 | 9 | 6 | 5 | 0.57 | 80231182 | 80280887 | tier1 | In-frame | 4283 | NA | 0.38008 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | CSNK1D|GSDMA | CSNK1D | GSDMA | 17 | 17 | -1 | 1 | 5 | 4 | 4 | 0.16 | 80210310 | 38121936 | tier1 | CDS-5UTR | 4281 | non-validated | 0.37972 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | CSNK1D|ASPSCR1 | CSNK1D | ASPSCR1 | 17 | 17 | -1 | 1 | 26 | 8 | 8 | 0.15 | 80231182 | 79974817 | tier1 | Out-of-frame | 4280 | NA | 0.37964 |
| BRCA | TCGA-A8-A09C-01A | TCGA-A8-A09C | CBX4|EFCAB5 | CBX4 | EFCAB5 | 17 | 17 | -1 | 1 | 99 | 114 | 101 | 1.7 | 77811636 | 28418889 | tier1 | Out-of-frame | 3087 | NA | 0.37011 |
| LUAD | TCGA-97-A4M1-01A | TCGA-97-A4M1 | CBX4|RFK | CBX4 | RFK | 17 | 9 | -1 | -1 | 25 | 6 | 6 | 0.021 | 77811636 | 79003572 | tier1 | Out-of-frame | 3088 | NA | 0.37084 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | TNFRSF11A|KIAA1468 | TNFRSF11A | KIAA1468 | 18 | 18 | 1 | 1 | 3 | 1 | 1 | 3.1 | 60036717 | 59954584 | tier2 | In-frame | 18337 | NA | 0 |
| ESCA | TCGA-2H-A9GJ-01A | TCGA-2H-A9GJ | TNFRSF11A|KIAA1468 | TNFRSF11A | KIAA1468 | 18 | 18 | 1 | 1 | 9 | 34 | 31 | 3.1 | 59992660 | 59911997 | tier1 | In-frame | 18336 | NA | 0 |
| LUAD | TCGA-69-7761-01A | TCGA-69-7761 | ERBB2|SUPT16H | ERBB2 | SUPT16H | 17 | 14 | 1 | -1 | 2 | 2 | 1 | 0.23 | 37884915 | 21829491 | tier2 | 3UTR-CDS | 5730 | NA | 0.39124 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | ERBB2|SLC39A11 | ERBB2 | SLC39A11 | 17 | 17 | 1 | -1 | 8 | 4 | 4 | 0.48 | 37871789 | 71084914 | tier1 | CDS-5UTR | 5729 | NA | 0.38394 |
| BRCA | TCGA-BH-A204-01A | TCGA-BH-A204 | ERBB2|CDK12 | ERBB2 | CDK12 | 17 | 17 | 1 | 1 | 175 | 94 | 75 | 0.41 | 37868701 | 37680927 | tier1 | In-frame | 5717 | NA | 0.38259 |
| BRCA | TCGA-AR-A254-01A | TCGA-AR-A254 | ERBB2|SLC29A3 | ERBB2 | SLC29A3 | 17 | 10 | 1 | 1 | 724 | 753 | 688 | 0.032 | 37883256 | 73121711 | tier1 | Out-of-frame | 5728 | NA | 0.38331 |
| ESCA | TCGA-L5-A88V-01A | TCGA-L5-A88V | ERBB2|PSMB3 | ERBB2 | PSMB3 | 17 | 17 | 1 | 1 | 1368 | 23559 | 21766 | 1.6 | 37876087 | 36916684 | tier1 | In-frame | 5727 | NA | 0.38625 |
| BLCA | TCGA-DK-A1A3-01A | TCGA-DK-A1A3 | ERBB2|PPP1R1B | ERBB2 | PPP1R1B | 17 | 17 | 1 | 1 | 22 | 15 | 13 | 3.8 | 37866734 | 37790136 | tier4 | In-frame | 5723 | NA | 0.38487 |
| BRCA | TCGA-UU-A93S-01A | TCGA-UU-A93S | ERBB2|CLDN7 | ERBB2 | CLDN7 | 17 | 17 | 1 | -1 | 2 | 2 | 2 | 1.2 | 37884915 | 7166264 | tier3 | 3UTR-5UTR | 5718 | NA | 0.3841 |
| CESC | TCGA-C5-A2LX-01A | TCGA-C5-A2LX | ERBB2|IKZF3 | ERBB2 | IKZF3 | 17 | 17 | 1 | -1 | 15 | 13 | 12 | 0.48 | 37872858 | 37985741 | tier1 | Out-of-frame | 5720 | NA | 0.39357 |
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