TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
CESC	TCGA-VS-A8EJ-01A	TCGA-VS-A8EJ	SSH2\|RUNDC3A	SSH2	RUNDC3A	17	17	-1	1	52	59	54	2.4	28022477	42393753	tier1	Out-of-frame	16913	NA	0
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	ARSG\|CDK12	ARSG	CDK12	17	17	1	1	2	6	6	0.3	66352945	37667782	tier3	In-frame	1465	NA	0.32575
BRCA	TCGA-A8-A09Q-01A	TCGA-A8-A09Q	ARSG\|CEP112	ARSG	CEP112	17	17	1	-1	5	8	8	0.13	66303852	64092750	tier1	Out-of-frame	1466	NA	0.32575
BRCA	TCGA-D8-A27G-01A	TCGA-D8-A27G	ARSG\|TEX2	ARSG	TEX2	17	17	1	-1	4	1	1	7.8	66397591	62291602	tier2	CDS-5UTR	1467	NA	0.33108
LUAD	TCGA-O1-A52J-01A	TCGA-O1-A52J	AFG3L2\|TIAM1	AFG3L2	TIAM1	18	21	-1	-1	2	3	3	0.82	12337340	32503266	tier2	Out-of-frame	598	NA	0.3882
HNSC	TCGA-CV-7235-01A	TCGA-CV-7235	SLC39A6\|MAST2	SLC39A6	MAST2	18	1	-1	1	26	31	29	2.6	33694060	46485268	tier1	Out-of-frame	16211	NA	0
LGG	TCGA-TM-A84I-01A	TCGA-TM-A84I	GALNT1\|TAF4B	GALNT1	TAF4B	18	18	1	1	20	43	39	0.19	33234765	23937654	tier1	Out-of-frame	6911	NA	0.36478
LUAD	TCGA-05-4395-01A	TCGA-05-4395	NPC1\|FGD4	NPC1	FGD4	18	12	-1	1	13	20	9	0.4	21124924	32751431	tier1	In-frame	11685	validated	0.36992
PRAD	TCGA-EJ-5524-01A	TCGA-EJ-5524	NPC1\|OSBPL1A	NPC1	OSBPL1A	18	18	-1	-1	2	2	2	0.71	21113319	21883682	tier3	Out-of-frame	11687	NA	0.35457
UCEC	TCGA-AX-A3G4-01A	TCGA-AX-A3G4	NPC1\|ANKRD29	NPC1	ANKRD29	18	18	-1	-1	2	1	1	0.57	21131591	21214113	tier2	Out-of-frame	11684	NA	0.3443
UCEC	TCGA-AJ-A3NH-01A	TCGA-AJ-A3NH	NPC1\|OSBPL1A	NPC1	OSBPL1A	18	18	-1	-1	2	1	1	0.71	21113319	21957499	tier2	CDS-5UTR	11686	NA	0.35457
HNSC	TCGA-D6-A6EN-01A	TCGA-D6-A6EN	MINK1\|ALOX12	MINK1	ALOX12	17	17	1	1	18	8	7	0.12	4736935	6903655	tier1	In-frame	10371	NA	0.37104
LUAD	TCGA-50-8460-01A	TCGA-50-8460	MINK1\|NQO2	MINK1	NQO2	17	6	1	1	42	19	18	3.3	4736935	3010259	tier1	Out-of-frame	10372	NA	0.37311
STAD	TCGA-CD-A486-01A	TCGA-CD-A486	MINK1\|SPNS3	MINK1	SPNS3	17	17	1	1	2	56	55	0.34	4736935	4381867	tier4	In-frame	10373	NA	0.37201
LUAD	TCGA-38-4632-01A	TCGA-38-4632	MINK1\|USO1	MINK1	USO1	17	4	1	1	5	2	2	2.4	4736935	76720775	tier1	In-frame	10374	NA	0.37526
PRAD	TCGA-YL-A8SB-01A	TCGA-YL-A8SB	MINK1\|AC063977.1	MINK1	AC063977.1	17	19	1	1	11	3	2	0.07	4736935	51670761	tier1	CDS-5UTR	10370	NA	0.36605
SKCM	TCGA-EE-A2GU-06A	TCGA-EE-A2GU	TP53\|CHD3	TP53	CHD3	17	17	-1	1	130	59	56	0.69	7590695	7798657	tier1	5UTR-CDS	18466	NA	0
LGG	TCGA-DU-5853-01A	TCGA-DU-5853	TP53\|C17orf39	TP53	C17orf39	17	17	-1	1	25	13	3	0.032	7590695	17948461	tier1	5UTR-CDS	18465	NA	0
PRAD	TCGA-WW-A8ZI-01A	TCGA-WW-A8ZI	TP53\|ECSIT	TP53	ECSIT	17	19	-1	-1	5	8	6	0.55	7576853	11630008	tier1	CDS-5UTR	18467	NA	0
PRAD	TCGA-KK-A8IC-01A	TCGA-KK-A8IC	TP53\|FARP2	TP53	FARP2	17	2	-1	1	18	11	9	0.11	7590695	242312499	tier1	5UTR-5UTR	18468	NA	0

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