Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-78-7542-01A | TCGA-78-7542 | WARS|UTRN | WARS | UTRN | 14 | 6 | -1 | 1 | 2 | 4 | 1 | 0.11 | 100800816 | 144665237 | tier3 | NA | 19709 | NA | 0 |
| STAD | TCGA-IN-AB1X-01A | TCGA-IN-AB1X | WARS|EPB41L4B | WARS | EPB41L4B | 14 | 9 | -1 | -1 | 12 | 143 | 133 | 0.64 | 100835424 | 111979425 | tier1 | Out-of-frame | 19707 | NA | 0 |
| THCA | TCGA-EM-A3AQ-01A | TCGA-EM-A3AQ | WARS|CCNY | WARS | CCNY | 14 | 10 | -1 | 1 | 13 | 8 | 8 | 0.44 | 100828045 | 35772332 | tier1 | CDS-5UTR | 19706 | validated | 0 |
| STAD | TCGA-BR-4366-01A | TCGA-BR-4366 | SORD|TRIM69 | SORD | TRIM69 | 15 | 15 | 1 | 1 | 15 | 23 | 21 | 2.1 | 45315547 | 45059429 | tier1 | Out-of-frame | 16597 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | BAHD1|C15orf23 | BAHD1 | C15orf23 | 15 | 15 | 1 | 1 | 8 | 9 | 9 | 0.33 | 40733467 | 40678563 | tier1 | 5UTR-CDS | 1910 | NA | 0 |
| BRCA | TCGA-A8-A09E-01A | TCGA-A8-A09E | IGF1R|PRPS1 | IGF1R | PRPS1 | 15 | X | 1 | 1 | 4 | 3 | 3 | 0.87 | 99486281 | 106882525 | tier1 | In-frame | 8091 | NA | 0.38756 |
| BRCA | TCGA-GM-A2DK-01A | TCGA-GM-A2DK | IGF1R|ADPGK | IGF1R | ADPGK | 15 | 15 | 1 | -1 | 9 | 11 | 7 | 1.1 | 99251336 | 73064186 | tier1 | Out-of-frame | 8087 | NA | 0.38722 |
| BRCA | TCGA-E9-A1NF-01A | TCGA-E9-A1NF | IGF1R|ARID1B | IGF1R | ARID1B | 15 | 6 | 1 | 1 | 10 | 7 | 5 | 0.082 | 99251336 | 157469758 | tier1 | In-frame | 8088 | NA | 0.39315 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | IGF1R|C15orf41 | IGF1R | C15orf41 | 15 | 15 | 1 | 1 | 4 | 6 | 5 | 0.025 | 99251336 | 36936479 | tier1 | CDS-5UTR | 8089 | NA | 0 |
| BRCA | TCGA-BH-A1FG-01A | TCGA-BH-A1FG | IGF1R|RAB27A | IGF1R | RAB27A | 15 | 15 | 1 | -1 | 2 | 2 | 1 | 1.5 | 99251336 | 55562482 | tier3 | CDS-5UTR | 8092 | NA | 0.39045 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | IGF1R|TRIP4 | IGF1R | TRIP4 | 15 | 15 | 1 | 1 | 17 | 16 | 2 | 0.25 | 99486281 | 64737205 | tier1 | Out-of-frame | 8093 | NA | 0.38852 |
| BRCA | TCGA-A1-A0SF-01A | TCGA-A1-A0SF | IGF1R|WDR93 | IGF1R | WDR93 | 15 | 15 | 1 | 1 | 7 | 5 | 4 | 0.083 | 99251336 | 90244938 | tier2 | CDS-5UTR | 8094 | NA | 0.38735 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | IGF1R|MAP7 | IGF1R | MAP7 | 15 | 6 | 1 | -1 | 5 | 5 | 5 | 0.46 | 99251336 | 136742937 | tier1 | In-frame | 8090 | NA | 0.38621 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | ADAMTS17|SLC12A1 | ADAMTS17 | SLC12A1 | 15 | 15 | -1 | 1 | 5 | 5 | 5 | 1 | 100871094 | 48548008 | tier1 | In-frame | 440 | NA | 0.36052 |
| GBM | TCGA-14-1034-02B | TCGA-14-1034 | ADAMTS17|LPAR1 | ADAMTS17 | LPAR1 | 15 | 9 | -1 | -1 | 20 | 16 | 12 | 2.8 | 100589062 | 113638002 | tier1 | Out-of-frame | 436 | validated | 0.36488 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | ADAMTS17|PCDHA8 | ADAMTS17 | PCDHA8 | 15 | 5 | -1 | 1 | 3 | 1 | 1 | 0.096 | 100871094 | 140358534 | tier2 | Out-of-frame | 438 | NA | 0.35534 |
| LUSC | TCGA-33-4532-01A | TCGA-33-4532 | ADAMTS17|CERS3 | ADAMTS17 | CERS3 | 15 | 15 | -1 | -1 | 30 | 16 | 14 | 0.25 | 100692817 | 100996251 | tier1 | Out-of-frame | 435 | NA | 0.34702 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | ADAMTS17|RTKN2 | ADAMTS17 | RTKN2 | 15 | 10 | -1 | -1 | 3 | 9 | 9 | 1.5 | 100537590 | 64022580 | tier2 | In-frame | 439 | NA | 0.35636 |
| SKCM | TCGA-GN-A26A-06A | TCGA-GN-A26A | ADAMTS17|AKAP13 | ADAMTS17 | AKAP13 | 15 | 15 | -1 | 1 | 20 | 5 | 3 | 100 | 100533253 | 86265222 | tier1 | In-frame | 434 | validated | 0.38345 |
| SKCM | TCGA-ER-A19C-06A | TCGA-ER-A19C | ADAMTS17|NCF4 | ADAMTS17 | NCF4 | 15 | 22 | -1 | 1 | 22 | 9 | 8 | 1.3 | 100533253 | 37260087 | tier1 | Out-of-frame | 437 | NA | 0.37612 |
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