Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-DS-A1OD-01A | TCGA-DS-A1OD | VAMP1|CD27 | VAMP1 | CD27 | 12 | 12 | -1 | 1 | 24 | 14 | 14 | 0.57 | 6579696 | 6554590 | tier1 | 5UTR-CDS | 19496 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | VAMP1|MARCH11 | VAMP1 | MARCH11 | 12 | 5 | -1 | -1 | 2 | 4 | 4 | 0.062 | 6574056 | 16067902 | tier2 | Out-of-frame | 19498 | NA | 0 |
| PRAD | TCGA-EJ-5503-01A | TCGA-EJ-5503 | COL2A1|ZNF609 | COL2A1 | ZNF609 | 12 | 15 | -1 | 1 | 3 | 1 | 1 | 0.45 | 48398020 | 64915026 | tier3 | Out-of-frame | 4012 | NA | 0.36645 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | LRIG3|SLC16A7 | LRIG3 | SLC16A7 | 12 | 12 | -1 | 1 | 41 | 22 | 20 | 0.66 | 59267837 | 60165000 | tier1 | In-frame | 9502 | validated | 0.35008 |
| SARC | TCGA-MB-A8JL-01A | TCGA-MB-A8JL | LRIG3|XRCC6BP1 | LRIG3 | XRCC6BP1 | 12 | 12 | -1 | 1 | 156 | 136 | 129 | 0.18 | 59307763 | 58339411 | tier1 | Out-of-frame | 9503 | NA | 0.35371 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | LRIG3|PIP4K2C | LRIG3 | PIP4K2C | 12 | 12 | -1 | 1 | 82 | 22 | 20 | 1.5 | 59307763 | 57995709 | tier1 | CDS-3UTR | 9500 | NA | 0.3538 |
| ESCA | TCGA-LN-A4A1-01A | TCGA-LN-A4A1 | LRIG3|RP11-362K2.2 | LRIG3 | RP11-362K2.2 | 12 | 12 | -1 | 1 | 9 | 179 | 164 | 0.73 | 59307763 | 59206196 | tier1 | In-frame | 9501 | non-validated | 0.34527 |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | LRIG3|ATF7 | LRIG3 | ATF7 | 12 | 12 | -1 | -1 | 86 | 42 | 38 | 3.4 | 59307763 | 53994805 | tier1 | CDS-5UTR | 9499 | NA | 0.3777 |
| BLCA | TCGA-ZF-AA4U-01A | TCGA-ZF-AA4U | LGR5|PTPRR | LGR5 | PTPRR | 12 | 12 | 1 | -1 | 5 | 3 | 2 | 0.004 | 71898465 | 71286757 | tier1 | Out-of-frame | 9316 | NA | 0.37575 |
| BLCA | TCGA-ZF-AA4U-01A | TCGA-ZF-AA4U | LGR5|CNOT2 | LGR5 | CNOT2 | 12 | 12 | 1 | 1 | 36 | 40 | 37 | 0.018 | 71928966 | 70747609 | tier1 | Out-of-frame | 9313 | NA | 0.35445 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | LGR5|FAM19A2 | LGR5 | FAM19A2 | 12 | 12 | 1 | -1 | 11 | 20 | 17 | 0.68 | 71928966 | 62261207 | tier1 | CDS-5UTR | 9314 | NA | 0.3444 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | LGR5|PPFIA2 | LGR5 | PPFIA2 | 12 | 12 | 1 | -1 | 4 | 2 | 2 | 0.88 | 71928966 | 81851645 | tier1 | Out-of-frame | 9315 | NA | 0.36566 |
| PRAD | TCGA-M7-A724-01A | TCGA-M7-A724 | SLC15A4|TMEM132D | SLC15A4 | TMEM132D | 12 | 12 | -1 | -1 | 5 | 3 | 3 | 0.16 | 129299320 | 130185243 | tier1 | Out-of-frame | 16025 | NA | 0 |
| COAD | TCGA-A6-6648-01A | TCGA-A6-6648 | MTMR6|DDX21 | MTMR6 | DDX21 | 13 | 10 | -1 | 1 | 2 | 4 | 2 | 3.3 | 25821372 | 70723858 | tier4 | NA | 10831 | NA | 0.36578 |
| BLCA | TCGA-K4-A4AC-01A | TCGA-K4-A4AC | SLC7A1|CDX2 | SLC7A1 | CDX2 | 13 | 13 | -1 | -1 | 50 | 21 | 19 | 0.096 | 30127898 | 28539152 | tier1 | 5UTR-CDS | 16286 | NA | 0 |
| HNSC | TCGA-F7-A622-01A | TCGA-F7-A622 | SLC7A1|UBL3 | SLC7A1 | UBL3 | 13 | 13 | -1 | -1 | 2 | 5 | 4 | 0.32 | 30127898 | 30351400 | tier3 | 5UTR-CDS | 16288 | NA | 0 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | SLC7A1|USPL1 | SLC7A1 | USPL1 | 13 | 13 | -1 | 1 | 2 | 4 | 4 | 0.081 | 30127898 | 31195901 | tier3 | 5UTR-CDS | 16289 | NA | 0 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | SLC7A1|HRSP12 | SLC7A1 | HRSP12 | 13 | 8 | -1 | -1 | 9 | 20 | 19 | 0.27 | 30104675 | 99120979 | tier4 | In-frame | 16287 | NA | 0 |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | SLC7A1|AKNA | SLC7A1 | AKNA | 13 | 9 | -1 | -1 | 11 | 5 | 5 | 0.045 | 30169553 | 117143726 | tier1 | 5UTR-5UTR | 16285 | NA | 0 |
| UCEC | TCGA-AX-A3FW-01A | TCGA-AX-A3FW | SLC39A5|KRT84 | SLC39A5 | KRT84 | 12 | 12 | 1 | -1 | 4 | 3 | 3 | 0.52 | 56626656 | 52774367 | tier1 | In-frame | 16210 | NA | 0 |
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