Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-B0-4698-01A | TCGA-B0-4698 | BMPR1B|DDAH1 | BMPR1B | DDAH1 | 4 | 1 | 1 | -1 | 3 | 4 | 4 | 0.8 | 96025718 | 85824530 | tier1 | Out-of-frame | 2134 | NA | 0.37797 |
| PRAD | TCGA-SU-A7E7-01A | TCGA-SU-A7E7 | BMPR1B|ETV1 | BMPR1B | ETV1 | 4 | 7 | 1 | -1 | 11 | 45 | 41 | 0.38 | 95679219 | 14028764 | tier4 | 5UTR-5UTR | 2135 | NA | 0.38724 |
| PRAD | TCGA-EJ-7330-01A | TCGA-EJ-7330 | BMPR1B|PDLIM5 | BMPR1B | PDLIM5 | 4 | 4 | 1 | 1 | 9 | 22 | 20 | 0.099 | 95679219 | 95561427 | tier1 | 5UTR-CDS | 2137 | NA | 0.38726 |
| PRAD | TCGA-HC-A4ZV-01A | TCGA-HC-A4ZV | BMPR1B|PDLIM5 | BMPR1B | PDLIM5 | 4 | 4 | 1 | 1 | 2 | 2 | 1 | 0.099 | 95679219 | 95444875 | tier4 | 5UTR-CDS | 2138 | NA | 0.38726 |
| LUAD | TCGA-55-1592-01A | TCGA-55-1592 | BMP2K|SLC25A31 | BMP2K | SLC25A31 | 4 | 4 | 1 | 1 | 46 | 25 | 24 | 0.45 | 79786874 | 128694541 | tier1 | Out-of-frame | 2127 | NA | 0.36843 |
| LUAD | TCGA-78-7535-01A | TCGA-78-7535 | BMP2K|SHROOM3 | BMP2K | SHROOM3 | 4 | 4 | 1 | 1 | 4 | 2 | 2 | 0.22 | 79697875 | 77476762 | tier1 | Out-of-frame | 2126 | validated | 0.36902 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | BMP2K|ANXA3 | BMP2K | ANXA3 | 4 | 4 | 1 | 1 | 4 | 5 | 3 | 0.41 | 79697875 | 79494334 | tier1 | Out-of-frame | 2125 | NA | 0.37052 |
| LUAD | TCGA-55-7914-01A | TCGA-55-7914 | CDKL2|CXCL11 | CDKL2 | CXCL11 | 4 | 4 | -1 | -1 | 46 | 15 | 12 | 0.016 | 76551005 | 76957217 | tier1 | CDS-5UTR | 3460 | NA | 0.37995 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | CDKL2|G3BP2 | CDKL2 | G3BP2 | 4 | 4 | -1 | -1 | 5 | 3 | 2 | 0.17 | 76551005 | 76573925 | tier1 | In-frame | 3461 | NA | 0.38024 |
| HNSC | TCGA-CN-5364-01A | TCGA-CN-5364 | INTS12|CXXC4 | INTS12 | CXXC4 | 4 | 4 | -1 | -1 | 10 | 1 | 1 | 0.39 | 106613133 | 105393523 | tier2 | In-frame | 8260 | NA | 0.35119 |
| PRAD | TCGA-HC-8266-01A | TCGA-HC-8266 | PPP3CA|PPIL1 | PPP3CA | PPIL1 | 4 | 6 | -1 | -1 | 4 | 2 | 2 | 3.5 | 102267896 | 36839648 | tier1 | Out-of-frame | 13425 | NA | 0.36836 |
| PRAD | TCGA-HC-8266-01A | TCGA-HC-8266 | PPP3CA|INTS12 | PPP3CA | INTS12 | 4 | 4 | -1 | -1 | 7 | 4 | 4 | 4 | 102117073 | 106604474 | tier1 | Out-of-frame | 13424 | NA | 0.36671 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | PPP3CA|SPARCL1 | PPP3CA | SPARCL1 | 4 | 4 | -1 | -1 | 4 | 3 | 2 | 0.041 | 102267896 | 88420737 | tier1 | CDS-5UTR | 13427 | NA | 0.36878 |
| BRCA | TCGA-D8-A1X5-01A | TCGA-D8-A1X5 | PPP3CA|COL25A1 | PPP3CA | COL25A1 | 4 | 4 | -1 | -1 | 6 | 4 | 3 | 5.5 | 102267896 | 109895715 | tier1 | Out-of-frame | 13422 | NA | 0.37023 |
| PRAD | TCGA-CH-5790-01A | TCGA-CH-5790 | PPP3CA|BRD2 | PPP3CA | BRD2 | 4 | 6 | -1 | 1 | 2 | 7 | 1 | 0.82 | 101945485 | 32944339 | tier4 | 3UTR-CDS | 13421 | NA | 0.3759 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | PPP3CA|SEPT11 | PPP3CA | SEPT11 | 4 | 4 | -1 | 1 | 7 | 8 | 7 | 0.077 | 102267896 | 77917578 | tier1 | Out-of-frame | 13426 | NA | 0 |
| SARC | TCGA-DX-A3UA-01A | TCGA-DX-A3UA | PPP3CA|HMGXB3 | PPP3CA | HMGXB3 | 4 | 5 | -1 | 1 | 5 | 4 | 1 | 3.1 | 102267896 | 149406269 | tier4 | Out-of-frame | 13423 | NA | 0.36572 |
| BRCA | TCGA-A1-A0SK-01A | TCGA-A1-A0SK | PIK3C2G|PPFIBP1 | PIK3C2G | PPFIBP1 | 12 | 12 | 1 | 1 | 25 | 10 | 10 | 0.086 | 18552781 | 27826700 | tier2 | In-frame | 12831 | NA | 0.36679 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | PIK3C2G|CTDSP2 | PIK3C2G | CTDSP2 | 12 | 12 | 1 | -1 | 8 | 15 | 14 | 0.24 | 18435693 | 58218102 | tier1 | In-frame | 12830 | NA | 0.3521 |
| LIHC | TCGA-DD-A1EB-01A | TCGA-DD-A1EB | VAMP1|CHD4 | VAMP1 | CHD4 | 12 | 12 | -1 | -1 | 9 | 5 | 4 | 0.81 | 6574056 | 6711663 | tier1 | Out-of-frame | 19497 | non-validated | 0 |
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