Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | KIF11|HIF1AN | KIF11 | HIF1AN | 10 | 10 | 1 | 1 | 3 | 1 | 1 | 1.8 | 94376589 | 102296168 | tier2 | In-frame | 8927 | NA | 0.37142 |
| COAD | TCGA-G4-6314-01A | TCGA-G4-6314 | PLCE1|SH3PXD2A | PLCE1 | SH3PXD2A | 10 | 10 | 1 | -1 | 3 | 1 | 1 | 0.27 | 95792009 | 105365674 | tier2 | In-frame | 12967 | NA | 0.37894 |
| PRAD | TCGA-EJ-7785-01A | TCGA-EJ-7785 | TET1|EFHC2 | TET1 | EFHC2 | 10 | X | 1 | -1 | 6 | 2 | 2 | 1.1 | 70442730 | 44172002 | tier1 | In-frame | 17667 | NA | 0 |
| SARC | TCGA-IF-A4AK-01A | TCGA-IF-A4AK | TET1|TMEM222 | TET1 | TMEM222 | 10 | 1 | 1 | 1 | 9 | 5 | 5 | 1.8 | 70411693 | 27660449 | tier1 | In-frame | 17668 | NA | 0 |
| BRCA | TCGA-B6-A0RI-01A | TCGA-B6-A0RI | PPIG|CRIM1 | PPIG | CRIM1 | 2 | 2 | 1 | 1 | 47 | 31 | 30 | 0.39 | 170441000 | 36726362 | tier1 | 5UTR-CDS | 13293 | NA | 0.36909 |
| PRAD | TCGA-EJ-7115-01A | TCGA-EJ-7115 | PPIG|SCN9A | PPIG | SCN9A | 2 | 2 | 1 | -1 | 3 | 3 | 3 | 2.2 | 170441409 | 167163584 | tier1 | NA | 13295 | NA | 0.36694 |
| LUSC | TCGA-85-A4JB-01A | TCGA-85-A4JB | PPIG|FAM117B | PPIG | FAM117B | 2 | 2 | 1 | 1 | 14 | 5 | 5 | 0.38 | 170489757 | 203589640 | tier1 | In-frame | 13294 | NA | 0.36476 |
| LUAD | TCGA-44-A4SS-01A | TCGA-44-A4SS | ITGAV|PDE11A | ITGAV | PDE11A | 2 | 2 | 1 | -1 | 13 | 7 | 7 | 0.092 | 187455250 | 178769914 | tier1 | Out-of-frame | 8393 | NA | 0.37275 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | ITGAV|IFT172 | ITGAV | IFT172 | 2 | 2 | 1 | -1 | 2 | 4 | 3 | 4.7 | 187466878 | 27708370 | tier3 | Out-of-frame | 8392 | NA | 0.37637 |
| LUSC | TCGA-43-2578-01A | TCGA-43-2578 | ITGAV|FARP2 | ITGAV | FARP2 | 2 | 2 | 1 | 1 | 6 | 5 | 4 | 1 | 187534541 | 242429377 | tier1 | In-frame | 8391 | NA | 0.37825 |
| SARC | TCGA-VT-A80G-01A | TCGA-VT-A80G | ITGAV|ARHGAP15 | ITGAV | ARHGAP15 | 2 | 2 | 1 | 1 | 16 | 5 | 5 | 0.74 | 187534541 | 143986150 | tier1 | Out-of-frame | 8390 | NA | 0.38086 |
| PRAD | TCGA-J4-8198-01A | TCGA-J4-8198 | SLC40A1|TYK2 | SLC40A1 | TYK2 | 2 | 19 | -1 | -1 | 2 | 6 | 6 | 6.5 | 190425318 | 10491352 | tier4 | 3UTR-5UTR | 16220 | NA | 0 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | SENP7|RFC4 | SENP7 | RFC4 | 3 | 3 | -1 | -1 | 4 | 3 | 3 | 0.88 | 101046510 | 186515403 | tier1 | In-frame | 15588 | NA | 0 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | USP8|SLC27A2 | USP8 | SLC27A2 | 15 | 15 | 1 | 1 | 2 | 1 | 1 | 1.7 | 50731374 | 50489697 | tier2 | Out-of-frame | 19435 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | USP8|ADAMTSL3 | USP8 | ADAMTSL3 | 15 | 15 | 1 | 1 | 3 | 1 | 1 | 1.5 | 50741682 | 84700087 | tier2 | Out-of-frame | 19432 | non-validated | 0 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | USP8|C9orf93 | USP8 | C9orf93 | 15 | 9 | 1 | 1 | 4 | 1 | 1 | 0.39 | 50716711 | 15777598 | tier2 | 5UTR-CDS | 19434 | NA | 0 |
| SARC | TCGA-DX-A6YZ-01A | TCGA-DX-A6YZ | USP8|TSPAN3 | USP8 | TSPAN3 | 15 | 15 | 1 | -1 | 41 | 68 | 60 | 2.8 | 50763992 | 77348597 | tier1 | In-frame | 19436 | NA | 0 |
| SKCM | TCGA-BF-A5EQ-01A | TCGA-BF-A5EQ | USP8|BDP1 | USP8 | BDP1 | 15 | 5 | 1 | 1 | 2 | 1 | 1 | 0.054 | 50769696 | 70786811 | tier2 | Out-of-frame | 19433 | NA | 0 |
| SARC | TCGA-DX-A1L1-01A | TCGA-DX-A1L1 | FGF2|FREM3 | FGF2 | FREM3 | 4 | 4 | 1 | -1 | 38 | 22 | 21 | 0.47 | 123748507 | 144548913 | tier1 | NA | 6451 | NA | 0.37259 |
| BRCA | TCGA-A2-A0ET-01A | TCGA-A2-A0ET | BMPR1B|MCC | BMPR1B | MCC | 4 | 5 | 1 | -1 | 12 | 10 | 9 | 0.13 | 95917285 | 112406931 | tier1 | 5UTR-CDS | 2136 | NA | 0.38318 |
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