TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PRAD	TCGA-VP-A87K-01A	TCGA-VP-A87K	SLC22A23\|NRSN1	SLC22A23	NRSN1	6	6	-1	1	3	4	2	0.046	3410422	24134547	tier1	CDS-5UTR	16071	NA	0
SKCM	TCGA-YD-A89C-06A	TCGA-YD-A89C	SLC22A23\|LRRC49	SLC22A23	LRRC49	6	15	-1	1	88	87	78	2.3	3410422	71196891	tier1	Out-of-frame	16069	NA	0
STAD	TCGA-BR-4357-01A	TCGA-BR-4357	SLC22A23\|C6orf145	SLC22A23	C6orf145	6	6	-1	-1	5	5	5	1.8	3410422	3738382	tier1	In-frame	16064	NA	0
UCEC	TCGA-A5-A1OH-01A	TCGA-A5-A1OH	SLC22A23\|RP4-761I2.2	SLC22A23	RP4-761I2.2	6	6	-1	1	11	8	7	0.32	3456140	11134636	tier1	Out-of-frame	16072	NA	0
LUAD	TCGA-55-A493-01A	TCGA-55-A493	TUBB2A\|SLC22A23	TUBB2A	SLC22A23	6	6	-1	-1	12	5	5	0.38	3155859	3324236	tier1	In-frame	18927	NA	0
PCPG	TCGA-RW-A686-01A	TCGA-RW-A686	BPHL\|C6orf125	BPHL	C6orf125	6	6	1	-1	9	6	5	100	3119081	33665527	tier1	Out-of-frame	2152	NA	0
BRCA	TCGA-AN-A0FJ-01A	TCGA-AN-A0FJ	RIPK1\|NQO2	RIPK1	NQO2	6	6	1	1	2	3	3	2.7	3089891	3006702	tier2	CDS-5UTR	14704	NA	0
KIRC	TCGA-AS-3777-01A	TCGA-AS-3777	SLCO2B1\|HNF4A	SLCO2B1	HNF4A	11	20	1	1	6	9	6	0.15	74870949	43034698	tier1	5UTR-CDS	16309	NA	0
LIHC	TCGA-DD-A115-01A	TCGA-DD-A115	SLCO2B1\|HNF4A	SLCO2B1	HNF4A	11	20	1	1	17	15	13	0.15	74862442	43034698	tier1	In-frame	16310	NA	0
BRCA	TCGA-D8-A27H-01A	TCGA-D8-A27H	PRCP\|RAB30	PRCP	RAB30	11	11	-1	-1	12	8	6	1.1	82611277	82698812	tier1	In-frame	13494	non-validated	0.35695
PRAD	TCGA-EJ-8468-01A	TCGA-EJ-8468	PRCP\|RAB30	PRCP	RAB30	11	11	-1	-1	6	14	13	1.1	82611277	82705164	tier1	In-frame	13495	NA	0.35695
SKCM	TCGA-FS-A1ZS-06A	TCGA-FS-A1ZS	PRCP\|DLG2	PRCP	DLG2	11	11	-1	-1	8	6	6	0.25	82564219	83810090	tier1	In-frame	13493	NA	0.37869
BRCA	TCGA-AC-A7VC-01A	TCGA-AC-A7VC	SULF1\|C8orf34	SULF1	C8orf34	8	8	1	1	2	4	3	2.6	70379185	69728121	tier4	5UTR-CDS	17174	NA	0
LUAD	TCGA-91-6829-01A	TCGA-91-6829	SULF1\|ANKS1A	SULF1	ANKS1A	8	6	1	1	2	18	15	0.009	70573147	34977682	tier4	NA	17173	NA	0
SARC	TCGA-DX-AB2E-01A	TCGA-DX-AB2E	MMP13\|SUPT16H	MMP13	SUPT16H	11	14	-1	-1	2	20	3	0.45	102813724	21829491	tier3	3UTR-CDS	10543	NA	0.37612
BRCA	TCGA-EW-A1P0-01A	TCGA-EW-A1P0	MAP2K5\|ADAMTSL3	MAP2K5	ADAMTSL3	15	15	1	1	8	5	1	2.1	68040939	84373141	tier2	In-frame	9840	NA	0.39317
BLCA	TCGA-K4-A83P-01A	TCGA-K4-A83P	MAP2K5\|C15orf61	MAP2K5	C15orf61	15	15	1	1	12	6	5	1.3	67893087	67818756	tier1	Out-of-frame	9842	NA	0
CESC	TCGA-C5-A7X3-01A	TCGA-C5-A7X3	MAP2K5\|IQCH	MAP2K5	IQCH	15	15	1	1	8	9	8	1.2	67885312	67782341	tier1	In-frame	9843	NA	0.39116
HNSC	TCGA-CR-7386-01A	TCGA-CR-7386	MAP2K5\|RAB27A	MAP2K5	RAB27A	15	15	1	-1	4	3	3	1	67835808	55527154	tier1	CDS-5UTR	9845	NA	0.39408
LUAD	TCGA-91-7771-01A	TCGA-91-7771	MAP2K5\|SMAD6	MAP2K5	SMAD6	15	15	1	1	2	1	1	0.24	67995746	67004006	tier2	Out-of-frame	9846	NA	0.39698

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