Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | ADAMTS7|AC087465.1 | ADAMTS7 | AC087465.1 | 15 | 15 | -1 | -1 | 16 | 20 | 19 | 0.65 | 79080573 | 77407661 | tier1 | Out-of-frame | 442 | validated | 0.34241 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | ADAMTS7|TMEM135 | ADAMTS7 | TMEM135 | 15 | 11 | -1 | 1 | 3 | 5 | 4 | 0.22 | 79103463 | 86947680 | tier1 | Out-of-frame | 443 | NA | 0.34804 |
| KIRP | TCGA-2Z-A9J3-01A | TCGA-2Z-A9J3 | NMT1|HIGD1B | NMT1 | HIGD1B | 17 | 17 | 1 | 1 | 46 | 6 | 6 | 100 | 43138828 | 42926622 | tier2 | Out-of-frame | 11623 | NA | 0.36162 |
| LUSC | TCGA-43-2581-01A | TCGA-43-2581 | NMT1|NME1-NME2 | NMT1 | NME1-NME2 | 17 | 17 | 1 | 1 | 66 | 13 | 12 | 0.21 | 43138828 | 49233012 | tier1 | CDS-5UTR | 11624 | NA | 0.36465 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | KAT7|F10 | KAT7 | F10 | 17 | 13 | 1 | 1 | 16 | 9 | 8 | 2.6 | 47875920 | 113792771 | tier1 | Out-of-frame | 8550 | NA | 0.35646 |
| BRCA | TCGA-A8-A076-01A | TCGA-A8-A076 | KAT7|AXIN2 | KAT7 | AXIN2 | 17 | 17 | 1 | -1 | 9 | 8 | 7 | 0.17 | 47869395 | 63554854 | tier1 | CDS-5UTR | 8549 | NA | 0.37073 |
| THCA | TCGA-EM-A2CM-01A | TCGA-EM-A2CM | KAT7|IGF2BP1 | KAT7 | IGF2BP1 | 17 | 17 | 1 | 1 | 6 | 2 | 2 | 4.1 | 47886570 | 47076471 | tier1 | Out-of-frame | 8552 | NA | 0.3529 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | EPRS|USH2A | EPRS | USH2A | 1 | 1 | -1 | -1 | 7 | 1 | 1 | 0.081 | 220213527 | 215853718 | tier2 | Out-of-frame | 5695 | NA | 0.37313 |
| BRCA | TCGA-A7-A26I-01B | TCGA-A7-A26I | EPRS|DNAH14 | EPRS | DNAH14 | 1 | 1 | -1 | 1 | 26 | 50 | 49 | 0.017 | 220160484 | 225506285 | tier1 | Out-of-frame | 5694 | NA | 0.36182 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | RPS6KC1|TFPI | RPS6KC1 | TFPI | 1 | 2 | 1 | -1 | 3 | 6 | 6 | 2.7 | 213251158 | 188368497 | tier1 | CDS-5UTR | 15100 | NA | 0 |
| LUAD | TCGA-50-5932-01A | TCGA-50-5932 | RPS6KC1|CD34 | RPS6KC1 | CD34 | 1 | 1 | 1 | -1 | 30 | 24 | 19 | 2 | 213290752 | 208073348 | tier1 | In-frame | 15097 | non-validated | 0 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | RPS6KC1|C1orf101 | RPS6KC1 | C1orf101 | 1 | 1 | 1 | 1 | 17 | 13 | 13 | 0.19 | 213277911 | 244715624 | tier1 | Out-of-frame | 15096 | NA | 0 |
| GBM | TCGA-27-2523-01A | TCGA-27-2523 | RPS6KC1|LYST | RPS6KC1 | LYST | 1 | 1 | 1 | -1 | 14 | 26 | 25 | 0.018 | 213303232 | 235840919 | tier1 | Out-of-frame | 15098 | validated | 0 |
| LUAD | TCGA-55-8620-01A | TCGA-55-8620 | RPS6KC1|SDCCAG8 | RPS6KC1 | SDCCAG8 | 1 | 1 | 1 | 1 | 3 | 3 | 3 | 0.5 | 213244383 | 243493842 | tier1 | In-frame | 15099 | NA | 0 |
| PRAD | TCGA-FC-7961-01A | TCGA-FC-7961 | RPS6KC1|VASH2 | RPS6KC1 | VASH2 | 1 | 1 | 1 | 1 | 12 | 6 | 5 | 0.24 | 213349835 | 213161854 | tier1 | Out-of-frame | 15101 | NA | 0 |
| LUAD | TCGA-50-6673-01A | TCGA-50-6673 | UGGT1|FAR1 | UGGT1 | FAR1 | 2 | 11 | 1 | 1 | 2 | 1 | 1 | 0.053 | 128953247 | 13744912 | tier3 | NA | 19192 | NA | 0 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | UGGT1|FOXP1 | UGGT1 | FOXP1 | 2 | 3 | 1 | -1 | 2 | 2 | 2 | 0.8 | 128939864 | 71027180 | tier3 | Out-of-frame | 19193 | NA | 0 |
| BRCA | TCGA-E2-A1IH-01A | TCGA-E2-A1IH | YME1L1|SLC35D2 | YME1L1 | SLC35D2 | 10 | 9 | -1 | -1 | 24 | 22 | 22 | 0.8 | 27437835 | 99122503 | tier1 | In-frame | 20039 | NA | 0 |
| GBM | TCGA-14-0871-01A | TCGA-14-0871 | TXN|NDST3 | TXN | NDST3 | 9 | 4 | -1 | 1 | 2 | 4 | 3 | 2.2 | 113013100 | 119059209 | tier3 | In-frame | 18977 | NA | 0 |
| HNSC | TCGA-CR-6478-01A | TCGA-CR-6478 | SLC2A8|GARNL3 | SLC2A8 | GARNL3 | 9 | 9 | 1 | 1 | 2 | 2 | 2 | 0.29 | 130162285 | 130116125 | tier4 | In-frame | 16138 | NA | 0 |
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