Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | SLC41A2|DNM3 | SLC41A2 | DNM3 | 12 | 1 | -1 | 1 | 51 | 29 | 24 | 0.029 | 105280071 | 172100315 | tier1 | Out-of-frame | 16223 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | SLC41A2|LIN7A | SLC41A2 | LIN7A | 12 | 12 | -1 | -1 | 77 | 34 | 34 | 3.4 | 105351866 | 81242101 | tier1 | NA | 16224 | NA | 0 |
| SKCM | TCGA-EB-A44R-06A | TCGA-EB-A44R | NEK3|GXYLT2 | NEK3 | GXYLT2 | 13 | 3 | -1 | 1 | 23 | 13 | 12 | 1.3 | 52722550 | 73006380 | tier1 | In-frame | 11355 | NA | 0.37022 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | PHF11|SETDB2 | PHF11 | SETDB2 | 13 | 13 | 1 | 1 | 4 | 3 | 3 | 0.32 | 50098352 | 50054355 | tier1 | Out-of-frame | 12698 | NA | 0.34983 |
| KIRP | TCGA-HE-7129-01A | TCGA-HE-7129 | ITM2B|PHF15 | ITM2B | PHF15 | 13 | 5 | 1 | 1 | 2 | 10 | 3 | 1.5 | 48835524 | 133861347 | tier4 | 3UTR-5UTR | 8423 | NA | 0.3596 |
| CESC | TCGA-EA-A5O9-01A | TCGA-EA-A5O9 | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 12 | 5 | 0.91 | 48835524 | 99058697 | tier4 | NA | 8425 | NA | 0.36477 |
| HNSC | TCGA-MT-A51X-01A | TCGA-MT-A51X | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 23 | 4 | 0.91 | 48835524 | 99058697 | tier4 | NA | 8427 | NA | 0.36477 |
| KIRP | TCGA-A4-A5Y1-01A | TCGA-A4-A5Y1 | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 9 | 9 | 0.91 | 48835524 | 99058697 | tier2 | NA | 8424 | NA | 0.36477 |
| KIRP | TCGA-HE-A5NH-01A | TCGA-HE-A5NH | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 22 | 8 | 0.91 | 48835524 | 99058697 | tier3 | NA | 8426 | NA | 0.36477 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | ITM2B|ARFGEF2 | ITM2B | ARFGEF2 | 13 | 20 | 1 | 1 | 2 | 4 | 4 | 0.17 | 48835524 | 47615777 | tier3 | 3UTR-CDS | 8419 | NA | 0.36306 |
| LUSC | TCGA-60-2706-01A | TCGA-60-2706 | ITM2B|ESD | ITM2B | ESD | 13 | 13 | 1 | -1 | 28 | 14 | 13 | 100 | 48807613 | 47367579 | tier1 | CDS-5UTR | 8421 | NA | 0.35166 |
| OV | TCGA-13-0799-01A | TCGA-13-0799 | ITM2B|MATR3 | ITM2B | MATR3 | 13 | 5 | 1 | 1 | 11 | 54 | 44 | 1.3 | 48807613 | 138665034 | tier1 | In-frame | 8422 | NA | 0.3678 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | ITM2B|CBS | ITM2B | CBS | 13 | 21 | 1 | -1 | 2 | 11 | 4 | 0.6 | 48835524 | 44476011 | tier4 | NA | 8420 | NA | 0.35659 |
| BLCA | TCGA-GU-A42Q-01A | TCGA-GU-A42Q | SETDB2|CAB39L | SETDB2 | CAB39L | 13 | 13 | 1 | -1 | 2 | 1 | 1 | 0.81 | 50062766 | 49957077 | tier2 | CDS-5UTR | 15715 | NA | 0 |
| BRCA | TCGA-BH-A0EE-01A | TCGA-BH-A0EE | SETDB2|ERH | SETDB2 | ERH | 13 | 14 | 1 | -1 | 286 | 171 | 161 | 100 | 50042096 | 69847357 | tier2 | In-frame | 15716 | NA | 0 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | SETDB2|AATF | SETDB2 | AATF | 13 | 17 | 1 | 1 | 9 | 4 | 3 | 0.47 | 50018993 | 35413901 | tier1 | 5UTR-CDS | 15714 | NA | 0 |
| CESC | TCGA-DS-A7WI-01A | TCGA-DS-A7WI | GPNMB|KLHL7 | GPNMB | KLHL7 | 7 | 7 | 1 | 1 | 27 | 35 | 31 | 0.34 | 23293931 | 23195610 | tier1 | NA | 7347 | NA | 0.35667 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | GPNMB|NUPL2 | GPNMB | NUPL2 | 7 | 7 | 1 | 1 | 55 | 42 | 39 | 2.2 | 23293931 | 23224689 | tier1 | In-frame | 7348 | NA | 0.35336 |
| LUSC | TCGA-98-8021-01A | TCGA-98-8021 | GPNMB|IRF6 | GPNMB | IRF6 | 7 | 1 | 1 | -1 | 2 | 1 | 1 | 0.13 | 23314253 | 209979465 | tier3 | 3UTR-5UTR | 7346 | NA | 0.3516 |
| LUSC | TCGA-77-7140-01A | TCGA-77-7140 | AOAH|ELMO1 | AOAH | ELMO1 | 7 | 7 | -1 | -1 | 126 | 143 | 127 | 1.2 | 36698771 | 36934622 | tier1 | In-frame | 1050 | NA | 0.36967 |
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