Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | CPM|C12orf28 | CPM | C12orf28 | 12 | 12 | -1 | 1 | 474 | 290 | 271 | 0.74 | 69326458 | 70345893 | tier1 | In-frame | 4123 | NA | 0 |
| SARC | TCGA-FX-A3RE-01A | TCGA-FX-A3RE | CPM|C12orf28 | CPM | C12orf28 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.74 | 69326458 | 70345893 | tier3 | In-frame | 4124 | non-validated | 0 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | CPM|C12orf28 | CPM | C12orf28 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.74 | 69326458 | 70345893 | tier3 | In-frame | 4125 | NA | 0 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | CPM|CCT2 | CPM | CCT2 | 12 | 12 | -1 | 1 | 60 | 39 | 37 | 1.8 | 69279572 | 69986756 | tier1 | In-frame | 4126 | non-validated | 0.36834 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | CPM|DNM3 | CPM | DNM3 | 12 | 1 | -1 | 1 | 9 | 3 | 2 | 0.52 | 69326458 | 172277868 | tier1 | Out-of-frame | 4127 | NA | 0.36041 |
| GBM | TCGA-19-2624-01A | TCGA-19-2624 | MDM2|EGFR | MDM2 | EGFR | 12 | 7 | 1 | 1 | 27 | 53 | 43 | 0.061 | 69203072 | 55231426 | tier1 | Out-of-frame | 10123 | non-validated | 0.39477 |
| SARC | TCGA-WK-A8XO-01A | TCGA-WK-A8XO | MDM2|PTPRR | MDM2 | PTPRR | 12 | 12 | 1 | -1 | 5 | 4 | 4 | 0.27 | 69207408 | 71078563 | tier1 | Out-of-frame | 10128 | NA | 0.38544 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | MDM2|FGF18 | MDM2 | FGF18 | 12 | 5 | 1 | 1 | 80 | 126 | 116 | 0.52 | 69214154 | 170883543 | tier1 | Out-of-frame | 10124 | NA | 0.38309 |
| BRCA | TCGA-3C-AAAU-01A | TCGA-3C-AAAU | MDM2|NUP107 | MDM2 | NUP107 | 12 | 12 | 1 | 1 | 72 | 28 | 28 | 0.006 | 69229764 | 69113121 | tier1 | In-frame | 10125 | NA | 0.38075 |
| LUAD | TCGA-55-8085-01A | TCGA-55-8085 | MDM2|NUP107 | MDM2 | NUP107 | 12 | 12 | 1 | 1 | 8 | 8 | 7 | 0.006 | 69229764 | 69135593 | tier1 | In-frame | 10126 | NA | 0.38075 |
| LUSC | TCGA-NC-A5HE-01A | TCGA-NC-A5HE | MDM2|NUP107 | MDM2 | NUP107 | 12 | 12 | 1 | 1 | 59 | 40 | 38 | 0.006 | 69202271 | 69082742 | tier1 | In-frame | 10127 | NA | 0.38075 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | MDM2|AC079354.1 | MDM2 | AC079354.1 | 12 | 2 | 1 | 1 | 42 | 48 | 44 | 0.8 | 69222711 | 203019396 | tier1 | CDS-3UTR | 10120 | non-validated | 0.37722 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | MDM2|C12orf28 | MDM2 | C12orf28 | 12 | 12 | 1 | 1 | 22 | 27 | 23 | 0.067 | 69218431 | 70249060 | tier2 | CDS-5UTR | 10121 | NA | 0 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | MDM2|DIP2B | MDM2 | DIP2B | 12 | 12 | 1 | 1 | 4 | 4 | 4 | 0.19 | 69207408 | 51053977 | tier1 | Out-of-frame | 10122 | NA | 0.37872 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | MDM2|SLAMF9 | MDM2 | SLAMF9 | 12 | 1 | 1 | -1 | 10 | 17 | 17 | 0.3 | 69230529 | 159923443 | tier1 | Out-of-frame | 10129 | non-validated | 0.37892 |
| COAD | TCGA-AZ-6607-01A | TCGA-AZ-6607 | KCNK1|CCDC64 | KCNK1 | CCDC64 | 1 | 12 | 1 | 1 | 5 | 2 | 1 | 0.82 | 233750272 | 120509426 | tier2 | Out-of-frame | 8577 | NA | 0.35672 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | EGLN1|PTPRF | EGLN1 | PTPRF | 1 | 1 | -1 | 1 | 13 | 5 | 5 | 0.046 | 231556744 | 44083116 | tier1 | In-frame | 5387 | NA | 0.38158 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | EGLN1|PGBD5 | EGLN1 | PGBD5 | 1 | 1 | -1 | -1 | 4 | 3 | 2 | 0.25 | 231556744 | 230493067 | tier1 | CDS-5UTR | 5386 | NA | 0.35824 |
| BRCA | TCGA-B6-A0IM-01A | TCGA-B6-A0IM | GLUL|EIF2AK2 | GLUL | EIF2AK2 | 1 | 2 | -1 | -1 | 2 | 3 | 2 | 0.14 | 182352029 | 37342384 | tier3 | NA | 7129 | NA | 0.38234 |
| LIHC | TCGA-DD-AAEE-01A | TCGA-DD-AAEE | GLUL|STAT6 | GLUL | STAT6 | 1 | 12 | -1 | -1 | 2 | 5 | 1 | 0.056 | 182352029 | 57496773 | tier4 | NA | 7132 | NA | 0.37176 |
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