Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DH-A7UV-01A | TCGA-DH-A7UV | GDF11|HOXC8 | GDF11 | HOXC8 | 12 | 12 | 1 | 1 | 6 | 3 | 3 | 0.45 | 56143667 | 54404873 | tier1 | NA | 7023 | NA | 0.37096 |
| STAD | TCGA-BR-8680-01A | TCGA-BR-8680 | ACVR1B|SUPT16H | ACVR1B | SUPT16H | 12 | 14 | 1 | -1 | 2 | 4 | 3 | 0.063 | 52390862 | 21829491 | tier3 | 3UTR-CDS | 395 | NA | 0.38919 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | ACVR1B|CS | ACVR1B | CS | 12 | 12 | 1 | -1 | 14 | 3 | 3 | 1.7 | 52380726 | 56680429 | tier1 | Out-of-frame | 394 | NA | 0.38209 |
| BRCA | TCGA-GM-A2DH-01A | TCGA-GM-A2DH | TEC|PASD1 | TEC | PASD1 | 4 | X | -1 | 1 | 6 | 4 | 4 | 1.4 | 48271769 | 150789402 | tier2 | 5UTR-CDS | 17646 | NA | 0 |
| LUAD | TCGA-93-A4JQ-01A | TCGA-93-A4JQ | TEC|NCAM2 | TEC | NCAM2 | 4 | 21 | -1 | 1 | 6 | 2 | 2 | 0.088 | 48271769 | 22746183 | tier1 | 5UTR-CDS | 17645 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | USP15|PKP4 | USP15 | PKP4 | 12 | 2 | 1 | 1 | 5 | 4 | 2 | 0.28 | 62783768 | 159497139 | tier1 | In-frame | 19316 | NA | 0 |
| GBM | TCGA-41-2571-01A | TCGA-41-2571 | USP15|PCBP2 | USP15 | PCBP2 | 12 | 12 | 1 | 1 | 6 | 37 | 34 | 6.3 | 62654284 | 53848510 | tier1 | CDS-5UTR | 19315 | NA | 0 |
| LGG | TCGA-FG-A70Z-01A | TCGA-FG-A70Z | USP15|CPSF6 | USP15 | CPSF6 | 12 | 12 | 1 | 1 | 5 | 1 | 1 | 0.32 | 62654284 | 69644909 | tier3 | Out-of-frame | 19313 | NA | 0 |
| LUAD | TCGA-MP-A4SV-01A | TCGA-MP-A4SV | USP15|SYT1 | USP15 | SYT1 | 12 | 12 | 1 | 1 | 3 | 2 | 1 | 0.23 | 62654284 | 79679567 | tier3 | Out-of-frame | 19319 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | USP15|DPY19L2 | USP15 | DPY19L2 | 12 | 12 | 1 | -1 | 8 | 16 | 15 | 0.69 | 62719714 | 63977616 | tier1 | In-frame | 19314 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | USP15|PRRC2C | USP15 | PRRC2C | 12 | 1 | 1 | 1 | 7 | 3 | 2 | 1.8 | 62654284 | 171501482 | tier1 | Out-of-frame | 19317 | non-validated | 0 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | USP15|SRGAP1 | USP15 | SRGAP1 | 12 | 12 | 1 | 1 | 3 | 1 | 1 | 0.43 | 62719714 | 64377727 | tier2 | Out-of-frame | 19318 | non-validated | 0 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | GNS|SLC16A7 | GNS | SLC16A7 | 12 | 12 | -1 | 1 | 4 | 3 | 3 | 0.068 | 65146478 | 60173204 | tier1 | Out-of-frame | 7258 | non-validated | 0.34409 |
| SARC | TCGA-DX-A1KW-01A | TCGA-DX-A1KW | GNS|NUP107 | GNS | NUP107 | 12 | 12 | -1 | 1 | 182 | 171 | 149 | 0.67 | 65130784 | 69103018 | tier1 | In-frame | 7256 | validated | 0.35362 |
| SARC | TCGA-DX-A23T-01A | TCGA-DX-A23T | GNS|RASSF3 | GNS | RASSF3 | 12 | 12 | -1 | 1 | 79 | 333 | 312 | 2.2 | 65136921 | 65078567 | tier1 | In-frame | 7257 | NA | 0.34157 |
| BRCA | TCGA-E2-A10C-01A | TCGA-E2-A10C | CPM|KCNMA1 | CPM | KCNMA1 | 12 | 10 | -1 | -1 | 7 | 4 | 4 | 0.47 | 69326458 | 78669854 | tier1 | In-frame | 4130 | NA | 0.36567 |
| KIRC | TCGA-AS-3777-01A | TCGA-AS-3777 | CPM|GOLT1B | CPM | GOLT1B | 12 | 12 | -1 | 1 | 21 | 17 | 17 | 0.71 | 69326458 | 21659819 | tier1 | In-frame | 4128 | NA | 0.34374 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | CPM|GOLT1B | CPM | GOLT1B | 12 | 12 | -1 | 1 | 31 | 13 | 13 | 0.71 | 69326458 | 21659819 | tier1 | In-frame | 4129 | NA | 0.34374 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | CPM|AVIL | CPM | AVIL | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.7 | 69326458 | 58194995 | tier2 | Out-of-frame | 4121 | non-validated | 0.35681 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | CPM|BEST3 | CPM | BEST3 | 12 | 12 | -1 | -1 | 50 | 45 | 36 | 0.84 | 69326458 | 70049593 | tier1 | Out-of-frame | 4122 | NA | 0.34579 |
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