Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 158 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-A1AD-01A | TCGA-DK-A1AD | PHF21A|ARHGAP1 | PHF21A | ARHGAP1 | 11 | 11 | -1 | -1 | 6 | 2 | 1 | 0.25 | 46142486 | 46717706 | tier4 | 5UTR-5UTR | 12719 | NA | 0.38539 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | PHF21A|NUTF2 | PHF21A | NUTF2 | 11 | 16 | -1 | 1 | 14 | 22 | 22 | 0.05 | 46098305 | 67902243 | tier1 | In-frame | 12728 | NA | 0.37046 |
| BRCA | TCGA-BH-A0BG-01A | TCGA-BH-A0BG | PHF21A|C18orf34 | PHF21A | C18orf34 | 11 | 18 | -1 | -1 | 49 | 47 | 39 | 0.25 | 46098305 | 30847261 | tier2 | In-frame | 12721 | NA | 0 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | PHF21A|LEUTX | PHF21A | LEUTX | 11 | 19 | -1 | 1 | 3 | 14 | 13 | 0.049 | 46142486 | 40275167 | tier1 | 5UTR-5UTR | 12727 | NA | 0.36972 |
| HNSC | TCGA-CN-6994-01A | TCGA-CN-6994 | PHF21A|GLIS2 | PHF21A | GLIS2 | 11 | 16 | -1 | 1 | 24 | 9 | 7 | 0.096 | 45967391 | 4386726 | tier1 | Out-of-frame | 12726 | non-validated | 0.37091 |
| LAML | TCGA-AB-2965-03A | TCGA-AB-2965 | PHF21A|GLIS2 | PHF21A | GLIS2 | 11 | 16 | -1 | 1 | 3 | 1 | 1 | 0.096 | 45967391 | 4386726 | tier3 | Out-of-frame | 12725 | NA | 0.37091 |
| LUAD | TCGA-91-8497-01A | TCGA-91-8497 | PHF21A|ALKBH3 | PHF21A | ALKBH3 | 11 | 11 | -1 | 1 | 6 | 5 | 5 | 4.7 | 46142486 | 43904133 | tier1 | 5UTR-5UTR | 12715 | NA | 0.36829 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | PHF21A|AMBRA1 | PHF21A | AMBRA1 | 11 | 11 | -1 | -1 | 2 | 1 | 1 | 0.11 | 46113734 | 46515754 | tier3 | 5UTR-CDS | 12716 | NA | 0.37103 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | PHF21A|PACSIN3 | PHF21A | PACSIN3 | 11 | 11 | -1 | -1 | 3 | 9 | 9 | 0.043 | 46098305 | 47204620 | tier1 | CDS-5UTR | 12729 | NA | 0.37322 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | PHF21A|AMBRA1 | PHF21A | AMBRA1 | 11 | 11 | -1 | -1 | 6 | 1 | 1 | 0.11 | 46139473 | 46570050 | tier3 | NA | 12718 | NA | 0.37103 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | PHF21A|CKAP5 | PHF21A | CKAP5 | 11 | 11 | -1 | -1 | 5 | 4 | 4 | 0.004 | 45986866 | 46804918 | tier1 | In-frame | 12723 | NA | 0.36828 |
| PCPG | TCGA-QR-A70G-01B | TCGA-QR-A70G | PHF21A|AC091172.1 | PHF21A | AC091172.1 | 11 | 17 | -1 | 1 | 41 | 19 | 19 | 0.4 | 46098305 | 40117011 | tier1 | CDS-3UTR | 12713 | NA | 0.36596 |
| PRAD | TCGA-ZG-A9LZ-01A | TCGA-ZG-A9LZ | PHF21A|ACSL6 | PHF21A | ACSL6 | 11 | 5 | -1 | -1 | 5 | 5 | 5 | 0.14 | 46098305 | 131309093 | tier1 | In-frame | 12714 | NA | 0.37055 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | PHF21A|AMBRA1 | PHF21A | AMBRA1 | 11 | 11 | -1 | -1 | 3 | 8 | 7 | 0.11 | 46098305 | 46529920 | tier1 | Out-of-frame | 12717 | NA | 0.37103 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | PHF21A|ARHGAP1 | PHF21A | ARHGAP1 | 11 | 11 | -1 | -1 | 16 | 12 | 10 | 0.25 | 46142486 | 46717706 | tier1 | 5UTR-5UTR | 12720 | NA | 0.38539 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | CD63|EIF2AK2 | CD63 | EIF2AK2 | 12 | 2 | -1 | -1 | 2 | 6 | 3 | 1.5 | 56119232 | 37342384 | tier2 | NA | 3285 | NA | 0.38528 |
| KIRC | TCGA-BP-5199-01A | TCGA-BP-5199 | CD63|PLAT | CD63 | PLAT | 12 | 8 | -1 | -1 | 2 | 6 | 5 | 0.41 | 56119254 | 42051245 | tier3 | NA | 3287 | NA | 0.37747 |
| BLCA | TCGA-4Z-AA7S-01A | TCGA-4Z-AA7S | CD63|OS9 | CD63 | OS9 | 12 | 12 | -1 | 1 | 482 | 323 | 297 | 1.4 | 56119597 | 58109543 | tier1 | In-frame | 3286 | NA | 0.3589 |
| PRAD | TCGA-EJ-5499-01A | TCGA-EJ-5499 | CD63|AARS | CD63 | AARS | 12 | 16 | -1 | -1 | 2 | 10 | 4 | 0.15 | 56119252 | 70295060 | tier4 | 3UTR-CDS | 3283 | NA | 0.36548 |
| UCEC | TCGA-AJ-A3BG-01A | TCGA-AJ-A3BG | CD63|ANKS1A | CD63 | ANKS1A | 12 | 6 | -1 | 1 | 2 | 16 | 6 | 0.96 | 56119232 | 34977682 | tier3 | NA | 3284 | NA | 0.37581 |
|
Showing page 158 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.