Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 157 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-DS-A0VM-01A | TCGA-DS-A0VM | TAOK3|SUDS3 | TAOK3 | SUDS3 | 12 | 12 | -1 | 1 | 6 | 15 | 12 | 0.22 | 118810453 | 118823919 | tier1 | 5UTR-CDS | 17410 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | USP30|STAB2 | USP30 | STAB2 | 12 | 12 | 1 | 1 | 3 | 1 | 1 | 1.1 | 109509515 | 104134408 | tier2 | In-frame | 19344 | NA | 0 |
| KIRP | TCGA-5P-A9JZ-01A | TCGA-5P-A9JZ | SRPK2|PRKAR2B | SRPK2 | PRKAR2B | 7 | 7 | -1 | 1 | 269 | 195 | 177 | 0.49 | 104800954 | 106791367 | tier1 | In-frame | 16877 | NA | 0 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | SRPK2|PUS7 | SRPK2 | PUS7 | 7 | 7 | -1 | -1 | 32 | 46 | 45 | 0.46 | 105029095 | 105112640 | tier1 | In-frame | 16879 | NA | 0 |
| BRCA | TCGA-BH-A1FC-01A | TCGA-BH-A1FC | SRPK2|PUS7 | SRPK2 | PUS7 | 7 | 7 | -1 | -1 | 5 | 4 | 3 | 0.46 | 105029095 | 105148991 | tier1 | CDS-5UTR | 16880 | non-validated | 0 |
| HNSC | TCGA-CV-7418-01A | TCGA-CV-7418 | SRPK2|ATXN7L1 | SRPK2 | ATXN7L1 | 7 | 7 | -1 | -1 | 2 | 1 | 1 | 0.71 | 105029095 | 105305735 | tier3 | Out-of-frame | 16871 | NA | 0 |
| HNSC | TCGA-BB-4224-01A | TCGA-BB-4224 | SRPK2|KIAA1324L | SRPK2 | KIAA1324L | 7 | 7 | -1 | -1 | 16 | 3 | 3 | 0.9 | 104844075 | 86509846 | tier1 | Out-of-frame | 16874 | NA | 0 |
| KIRP | TCGA-B9-4114-01A | TCGA-B9-4114 | SRPK2|PUS7 | SRPK2 | PUS7 | 7 | 7 | -1 | -1 | 2 | 3 | 3 | 0.46 | 105029095 | 105148991 | tier3 | CDS-5UTR | 16878 | non-validated | 0 |
| KIRP | TCGA-5P-A9JZ-01A | TCGA-5P-A9JZ | SRPK2|ZC3HC1 | SRPK2 | ZC3HC1 | 7 | 7 | -1 | -1 | 30 | 22 | 21 | 3.2 | 104800954 | 129688984 | tier1 | Out-of-frame | 16883 | NA | 0 |
| LUAD | TCGA-NJ-A4YQ-01A | TCGA-NJ-A4YQ | SRPK2|DYNC1I1 | SRPK2 | DYNC1I1 | 7 | 7 | -1 | 1 | 2 | 1 | 1 | 1.4 | 105029095 | 95499195 | tier3 | In-frame | 16872 | NA | 0 |
| LUAD | TCGA-L9-A8F4-01A | TCGA-L9-A8F4 | SRPK2|PUS7 | SRPK2 | PUS7 | 7 | 7 | -1 | -1 | 7 | 2 | 1 | 0.46 | 105029095 | 105148991 | tier4 | CDS-5UTR | 16882 | NA | 0 |
| LUSC | TCGA-85-8352-01A | TCGA-85-8352 | SRPK2|LRP5 | SRPK2 | LRP5 | 7 | 11 | -1 | 1 | 53 | 51 | 46 | 2.4 | 105029095 | 68213904 | tier1 | Out-of-frame | 16876 | NA | 0 |
| THCA | TCGA-EM-A2OV-01A | TCGA-EM-A2OV | SRPK2|PUS7 | SRPK2 | PUS7 | 7 | 7 | -1 | -1 | 5 | 7 | 5 | 0.46 | 105029095 | 105148991 | tier1 | CDS-5UTR | 16881 | NA | 0 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | SRPK2|EFCAB10 | SRPK2 | EFCAB10 | 7 | 7 | -1 | -1 | 3 | 11 | 8 | 0.2 | 105029095 | 105210018 | tier1 | Out-of-frame | 16873 | NA | 0 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | SRPK2|KIF12 | SRPK2 | KIF12 | 7 | 9 | -1 | -1 | 7 | 5 | 5 | 3.5 | 105029095 | 116861449 | tier1 | In-frame | 16875 | NA | 0 |
| LIHC | TCGA-CC-A8HV-01A | TCGA-CC-A8HV | NT5E|ASCC3 | NT5E | ASCC3 | 6 | 6 | 1 | -1 | 2 | 2 | 2 | 0.3 | 86160196 | 101054964 | tier4 | In-frame | 11823 | NA | 0.35817 |
| LGG | TCGA-DU-6404-02B | TCGA-DU-6404 | MAP3K7|COL12A1 | MAP3K7 | COL12A1 | 6 | 6 | -1 | -1 | 4 | 3 | 3 | 0.59 | 91246056 | 75912543 | tier1 | CDS-5UTR | 9882 | non-validated | 0.3822 |
| CESC | TCGA-EA-A411-01A | TCGA-EA-A411 | PHF21A|TMEM123 | PHF21A | TMEM123 | 11 | 11 | -1 | -1 | 8 | 7 | 4 | 0.27 | 46098305 | 102272937 | tier1 | Out-of-frame | 12730 | NA | 0.36749 |
| PCPG | TCGA-QR-A70G-01B | TCGA-QR-A70G | PHF21A|CNP | PHF21A | CNP | 11 | 17 | -1 | 1 | 5 | 3 | 3 | 0.69 | 46098305 | 40120086 | tier1 | In-frame | 12724 | NA | 0.37175 |
| BRCA | TCGA-A8-A09D-01A | TCGA-A8-A09D | PHF21A|CAMK1D | PHF21A | CAMK1D | 11 | 10 | -1 | 1 | 16 | 16 | 14 | 2.1 | 46098305 | 12811672 | tier1 | In-frame | 12722 | NA | 0.37578 |
|
Showing page 157 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.