Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 154 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-FX-A3RE-01A | TCGA-FX-A3RE | C1QTNF6|RAC2 | C1QTNF6 | RAC2 | 22 | 22 | -1 | -1 | 25 | 9 | 8 | 0.54 | 37581258 | 37622843 | tier1 | In-frame | 2628 | non-validated | 0.37773 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | ADCK2|TBXAS1 | ADCK2 | TBXAS1 | 7 | 7 | 1 | 1 | 6 | 8 | 8 | 0.2 | 140387041 | 139661718 | tier1 | In-frame | 463 | NA | 0.34276 |
| BRCA | TCGA-A8-A07I-01A | TCGA-A8-A07I | ADCK2|DPP6 | ADCK2 | DPP6 | 7 | 7 | 1 | 1 | 9 | 3 | 2 | 1.4 | 140390613 | 154429531 | tier1 | In-frame | 462 | validated | 0.34766 |
| COAD | TCGA-D5-5540-01A | TCGA-D5-5540 | ATP13A3|DNAJC13 | ATP13A3 | DNAJC13 | 3 | 3 | -1 | 1 | 15 | 24 | 21 | 0.61 | 194206523 | 132219638 | tier1 | NA | 1687 | NA | 0.34568 |
| SKCM | TCGA-D3-A51N-06A | TCGA-D3-A51N | SPINK5|DNAJC21 | SPINK5 | DNAJC21 | 5 | 5 | 1 | 1 | 10 | 6 | 5 | 0.066 | 147505413 | 34945866 | tier1 | In-frame | 16729 | NA | 0 |
| PRAD | TCGA-TP-A8TV-01A | TCGA-TP-A8TV | IMPA1|RSPO2 | IMPA1 | RSPO2 | 8 | 8 | -1 | -1 | 2 | 1 | 1 | 0.3 | 82598487 | 109095035 | tier4 | 5UTR-5UTR | 8218 | NA | 0.34427 |
| PCPG | TCGA-WB-A81H-01A | TCGA-WB-A81H | AMPD3|ANKH | AMPD3 | ANKH | 11 | 5 | 1 | -1 | 28 | 22 | 20 | 1.2 | 10523137 | 14711419 | tier1 | In-frame | 885 | NA | 0.34083 |
| CESC | TCGA-JW-A5VL-01A | TCGA-JW-A5VL | HSD17B4|TNFAIP8 | HSD17B4 | TNFAIP8 | 5 | 5 | 1 | 1 | 61 | 32 | 28 | 0.1 | 118792063 | 118728511 | tier1 | In-frame | 7979 | NA | 0.35579 |
| STAD | TCGA-CD-A4MH-01A | TCGA-CD-A4MH | HSD17B4|TNFAIP8 | HSD17B4 | TNFAIP8 | 5 | 5 | 1 | 1 | 4 | 20 | 18 | 0.1 | 118850741 | 118728511 | tier1 | Out-of-frame | 7978 | NA | 0.35579 |
| PRAD | TCGA-KK-A8I5-01A | TCGA-KK-A8I5 | TMEM66|TNKS | TMEM66 | TNKS | 8 | 8 | -1 | 1 | 2 | 6 | 6 | 0.74 | 29940363 | 9537461 | tier2 | In-frame | 18050 | NA | 0 |
| BRCA | TCGA-BH-A42T-01A | TCGA-BH-A42T | DPF2|TRIM49L2 | DPF2 | TRIM49L2 | 11 | 11 | 1 | 1 | 14 | 10 | 10 | 0.21 | 65109033 | 89804314 | tier1 | In-frame | 5072 | NA | 0.36428 |
| GBM | TCGA-06-0141-01A | TCGA-06-0141 | DPF2|POLA2 | DPF2 | POLA2 | 11 | 11 | 1 | 1 | 6 | 19 | 18 | 1.3 | 65113830 | 65049950 | tier1 | In-frame | 5070 | NA | 0.37232 |
| LUSC | TCGA-52-7810-01A | TCGA-52-7810 | DPF2|CDC42EP2 | DPF2 | CDC42EP2 | 11 | 11 | 1 | 1 | 6 | 17 | 15 | 0.21 | 65101389 | 65088015 | tier1 | CDS-5UTR | 5069 | NA | 0.37195 |
| SKCM | TCGA-W3-A825-06A | TCGA-W3-A825 | DPF2|PPP1R10 | DPF2 | PPP1R10 | 11 | 6 | 1 | -1 | 17 | 17 | 17 | 0.011 | 65108016 | 30577732 | tier1 | CDS-5UTR | 5071 | NA | 0.36659 |
| BRCA | TCGA-A2-A1FV-01A | TCGA-A2-A1FV | PEBP4|UNC5D | PEBP4 | UNC5D | 8 | 8 | -1 | 1 | 2 | 4 | 4 | 0.95 | 22582356 | 35406810 | tier2 | In-frame | 12595 | NA | 0.37003 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | CDK7|CCNB1 | CDK7 | CCNB1 | 5 | 5 | 1 | 1 | 31 | 8 | 1 | 1.4 | 68531280 | 68463735 | tier4 | In-frame | 3438 | NA | 0.38343 |
| BRCA | TCGA-C8-A26W-01A | TCGA-C8-A26W | CDK7|RGS20 | CDK7 | RGS20 | 5 | 8 | 1 | 1 | 2 | 5 | 4 | 1.3 | 68531280 | 54866636 | tier3 | Out-of-frame | 3439 | NA | 0.38257 |
| PRAD | TCGA-VN-A88K-01A | TCGA-VN-A88K | CDK7|RIN3 | CDK7 | RIN3 | 5 | 14 | 1 | 1 | 25 | 22 | 9 | 0.005 | 68531280 | 93107583 | tier1 | Out-of-frame | 3440 | NA | 0.38397 |
| PRAD | TCGA-ZG-A9NI-01A | TCGA-ZG-A9NI | CDK7|SH3BGR | CDK7 | SH3BGR | 5 | 21 | 1 | 1 | 7 | 7 | 3 | 100 | 68531280 | 40871749 | tier1 | In-frame | 3441 | NA | 0.38124 |
| ESCA | TCGA-VR-A8Q7-01A | TCGA-VR-A8Q7 | IRAK2|BRK1 | IRAK2 | BRK1 | 3 | 3 | 1 | 1 | 4 | 55 | 51 | 1.8 | 10255232 | 10167310 | tier1 | Out-of-frame | 8336 | NA | 0.37701 |
|
Showing page 154 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.