Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | CHI3L1|THSD4 | CHI3L1 | THSD4 | 1 | 15 | -1 | 1 | 2 | 125 | 109 | 0.17 | 203148059 | 72072881 | tier3 | 3UTR-CDS | 3675 | NA | 0.34662 |
| LGG | TCGA-S9-A6U0-01A | TCGA-S9-A6U0 | CHI3L1|UTRN | CHI3L1 | UTRN | 1 | 6 | -1 | 1 | 2 | 17 | 17 | 0.79 | 203148059 | 144665237 | tier3 | NA | 3676 | NA | 0.37118 |
| THCA | TCGA-EM-A3SU-01A | TCGA-EM-A3SU | CHI3L1|CBS | CHI3L1 | CBS | 1 | 21 | -1 | -1 | 2 | 186 | 167 | 0.17 | 203148059 | 44476011 | tier3 | NA | 3674 | NA | 0.35797 |
| SKCM | TCGA-EB-A97M-01A | TCGA-EB-A97M | DSTYK|BRAF | DSTYK | BRAF | 1 | 7 | -1 | -1 | 27 | 7 | 7 | 0.016 | 205180399 | 140482957 | tier1 | In-frame | 5143 | NA | 0.38477 |
| OV | TCGA-13-A5FT-01A | TCGA-13-A5FT | DSTYK|INTS3 | DSTYK | INTS3 | 1 | 1 | -1 | 1 | 2 | 10 | 8 | 0.009 | 205180399 | 153730048 | tier2 | Out-of-frame | 5145 | NA | 0.32308 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | DSTYK|NUCKS1 | DSTYK | NUCKS1 | 1 | 1 | -1 | -1 | 10 | 9 | 8 | 0.043 | 205180399 | 205698749 | tier1 | Out-of-frame | 5147 | NA | 0.33446 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | DSTYK|LEMD1 | DSTYK | LEMD1 | 1 | 1 | -1 | -1 | 4 | 4 | 4 | 0.9 | 205180399 | 205389702 | tier1 | CDS-5UTR | 5146 | NA | 0.32922 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | DSTYK|CSRP1 | DSTYK | CSRP1 | 1 | 1 | -1 | -1 | 21 | 15 | 15 | 0.17 | 205180399 | 201454504 | tier1 | Out-of-frame | 5144 | NA | 0.35004 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | SLC41A1|C1orf159 | SLC41A1 | C1orf159 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.13 | 205779198 | 1027483 | tier2 | CDS-5UTR | 16221 | NA | 0 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | LGR6|GPR37L1 | LGR6 | GPR37L1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1.1 | 202163329 | 202096869 | tier2 | Out-of-frame | 9318 | non-validated | 0.34842 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | LGR6|GPR37L1 | LGR6 | GPR37L1 | 1 | 1 | 1 | 1 | 26 | 201 | 169 | 1.1 | 202205121 | 202096869 | tier1 | Out-of-frame | 9319 | NA | 0.34842 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | LGR6|GPR37L1 | LGR6 | GPR37L1 | 1 | 1 | 1 | 1 | 5 | 10 | 7 | 1.1 | 202163329 | 202096869 | tier1 | Out-of-frame | 9317 | NA | 0.34842 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | LGR6|NAV1 | LGR6 | NAV1 | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 0.48 | 202205121 | 201749549 | tier2 | In-frame | 9320 | NA | 0.35722 |
| BRCA | TCGA-A8-A09V-01A | TCGA-A8-A09V | DCLK1|SERPINE3 | DCLK1 | SERPINE3 | 13 | 13 | -1 | 1 | 15 | 2 | 2 | 0.56 | 36686006 | 51935414 | tier1 | Out-of-frame | 4603 | NA | 0.35799 |
| BRCA | TCGA-A2-A0CW-01A | TCGA-A2-A0CW | DCLK1|RCBTB1 | DCLK1 | RCBTB1 | 13 | 13 | -1 | -1 | 6 | 3 | 3 | 0.28 | 36445361 | 50108398 | tier1 | Out-of-frame | 4602 | NA | 0.36599 |
| SARC | TCGA-DX-A8BV-01A | TCGA-DX-A8BV | DCLK1|CLDN10 | DCLK1 | CLDN10 | 13 | 13 | -1 | 1 | 20 | 12 | 10 | 2.2 | 36686006 | 96212386 | tier1 | Out-of-frame | 4601 | NA | 0.3588 |
| ACC | TCGA-OR-A5J8-01A | TCGA-OR-A5J8 | POSTN|PTN | POSTN | PTN | 13 | 7 | -1 | -1 | 2 | 63 | 21 | 0.19 | 38136726 | 136938384 | tier3 | 3UTR-CDS | 13191 | NA | 0.36082 |
| BRCA | TCGA-A2-A25C-01A | TCGA-A2-A25C | POSTN|YY1 | POSTN | YY1 | 13 | 14 | -1 | 1 | 2 | 39 | 33 | 0.23 | 38136728 | 100728641 | tier3 | 3UTR-CDS | 13192 | NA | 0.37677 |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | POSTN|YY1 | POSTN | YY1 | 13 | 14 | -1 | 1 | 2 | 24 | 21 | 0.23 | 38136728 | 100728641 | tier3 | 3UTR-CDS | 13193 | non-validated | 0.37677 |
| PRAD | TCGA-KC-A7F5-01A | TCGA-KC-A7F5 | SLC39A11|OPN3 | SLC39A11 | OPN3 | 17 | 1 | -1 | -1 | 3 | 2 | 1 | 0.9 | 71027695 | 241761299 | tier3 | In-frame | 16193 | NA | 0 |
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