TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	SDF2\|MSI2	SDF2	MSI2	17	17	-1	1	2	6	5	0.11	26982305	55334459	tier3	Out-of-frame	15481	NA	0
BRCA	TCGA-A2-A0YE-01A	TCGA-A2-A0YE	SDF2\|RPTOR	SDF2	RPTOR	17	17	-1	1	24	8	7	0.36	26988744	78599491	tier1	Out-of-frame	15482	NA	0
BRCA	TCGA-E2-A1LE-01A	TCGA-E2-A1LE	PRMT7\|NFATC3	PRMT7	NFATC3	16	16	1	1	22	12	5	0.18	68389786	68260253	tier1	Out-of-frame	13588	NA	0.36153
SARC	TCGA-DX-A7EF-01A	TCGA-DX-A7EF	PRMT7\|EXOC4	PRMT7	EXOC4	16	7	1	1	18	23	21	0.036	68380183	133580352	tier1	In-frame	13587	NA	0.35454
LGG	TCGA-CS-6668-01A	TCGA-CS-6668	PTPRA\|SUPT16H	PTPRA	SUPT16H	20	14	1	-1	2	7	5	0.61	3019314	21829491	tier3	3UTR-CDS	13846	non-validated	0.38034
PAAD	TCGA-F2-6880-01A	TCGA-F2-6880	PTPRA\|PRSS1	PTPRA	PRSS1	20	7	1	1	2	4	2	0.1	2854406	142457330	tier4	5UTR-5UTR	13845	NA	0.37472
BRCA	TCGA-A2-A3Y0-01A	TCGA-A2-A3Y0	PTPRA\|N4BP1	PTPRA	N4BP1	20	16	1	-1	4	3	3	3.2	2998559	48596355	tier1	In-frame	13844	non-validated	0.36962
COAD	TCGA-A6-2677-01B	TCGA-A6-2677	PTPRA\|CDK5RAP1	PTPRA	CDK5RAP1	20	20	1	-1	3	4	4	0.97	2854406	31975339	tier1	5UTR-CDS	13843	non-validated	0.37066
LUAD	TCGA-97-A4LX-01A	TCGA-97-A4LX	PTPRA\|TADA2A	PTPRA	TADA2A	20	17	1	1	5	3	3	0.99	2854406	35771356	tier4	5UTR-5UTR	13847	NA	0.36619
LIHC	TCGA-DD-A4NB-01A	TCGA-DD-A4NB	CRP\|DDX27	CRP	DDX27	1	20	-1	1	2	492	434	0.66	159682079	47849303	tier3	NA	4240	non-validated	0.36323
BRCA	TCGA-AC-A4ZE-01A	TCGA-AC-A4ZE	ALDH3B2\|ODZ4	ALDH3B2	ODZ4	11	11	-1	-1	29	27	1	0.031	67441908	78433962	tier2	5UTR-CDS	805	NA	0.35334
LUSC	TCGA-92-7341-01A	TCGA-92-7341	ALDH3B2\|PLA2G16	ALDH3B2	PLA2G16	11	11	-1	-1	6	2	2	0.02	67434377	63357840	tier1	Out-of-frame	806	NA	0.35427
BLCA	TCGA-DK-AA6P-01A	TCGA-DK-AA6P	ATP8A2\|ALG5	ATP8A2	ALG5	13	13	1	-1	11	7	7	0.003	26436546	37559877	tier1	In-frame	1768	NA	0.3413
OV	TCGA-24-1550-01A	TCGA-24-1550	ATP8A2\|CRYL1	ATP8A2	CRYL1	13	13	1	-1	2	1	1	0.044	26436546	20987526	tier2	In-frame	1769	NA	0.34977
BRCA	TCGA-A8-A07I-01A	TCGA-A8-A07I	CDK8\|IKZF3	CDK8	IKZF3	13	17	1	-1	15	10	10	1.1	26828906	37988404	tier1	Out-of-frame	3444	validated	0.38402
SARC	TCGA-SI-AA8B-01A	TCGA-SI-AA8B	CDK8\|GCNT7	CDK8	GCNT7	13	20	1	-1	14	12	11	0.22	26928017	55070353	tier1	Out-of-frame	3442	NA	0.37807
STAD	TCGA-D7-8576-01A	TCGA-D7-8576	CDK8\|GTF2F2	CDK8	GTF2F2	13	13	1	1	2	12	11	1.9	26911779	45857577	tier3	In-frame	3443	NA	0.37858
LUSC	TCGA-46-3765-01A	TCGA-46-3765	CHRM3\|CASQ1	CHRM3	CASQ1	1	1	1	1	9	5	5	0.17	239990678	160162592	tier1	5UTR-CDS	3704	NA	0.37549
PRAD	TCGA-EJ-5518-01A	TCGA-EJ-5518	CHRM3\|SYT14	CHRM3	SYT14	1	1	1	1	11	5	5	0.038	239795586	210267667	tier1	5UTR-CDS	3705	NA	0.37722
LIHC	TCGA-DD-AAC8-01A	TCGA-DD-AAC8	CHI3L1\|APOA2	CHI3L1	APOA2	1	1	-1	-1	2	2	1	100	203148059	161193418	tier4	3UTR-5UTR	3673	NA	0.35118

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