TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
UCS	TCGA-N5-A4RA-01A	TCGA-N5-A4RA	NUP210\|MAST1	NUP210	MAST1	3	19	-1	1	4	4	4	0.36	13418956	12962748	tier1	In-frame	11934	NA	0.3734
LUAD	TCGA-38-4630-01A	TCGA-38-4630	NUP210\|FBLN2	NUP210	FBLN2	3	3	-1	1	13	10	7	1.1	13393379	13679062	tier1	Out-of-frame	11933	non-validated	0.36904
PAAD	TCGA-IB-7654-01A	TCGA-IB-7654	EMILIN2\|SMCHD1	EMILIN2	SMCHD1	18	18	1	1	3	5	5	0.1	2909817	2802526	tier1	Out-of-frame	5546	NA	0.34721
BRCA	TCGA-A7-A26G-01A	TCGA-A7-A26G	RAMP1\|RBM44	RAMP1	RBM44	2	2	1	1	2	1	1	100	238768370	238722235	tier3	CDS-5UTR	14246	non-validated	0
COAD	TCGA-NH-A5IV-01A	TCGA-NH-A5IV	RAMP1\|RBM44	RAMP1	RBM44	2	2	1	1	20	9	7	100	238768370	238722235	tier1	CDS-5UTR	14247	NA	0
CHOL	TCGA-W5-AA31-01A	TCGA-W5-AA31	INPP5K\|RPA1	INPP5K	RPA1	17	17	-1	1	13	12	9	0.5	1417166	1746097	tier1	Out-of-frame	8254	NA	0.35865
LUSC	TCGA-85-A50M-01A	TCGA-85-A50M	ITGB4\|PTN	ITGB4	PTN	17	7	1	-1	2	11	11	0.34	73753898	136938384	tier3	3UTR-CDS	8401	NA	0.3805
BRCA	TCGA-C8-A26X-01A	TCGA-C8-A26X	ITGB4\|SLC16A5	ITGB4	SLC16A5	17	17	1	1	9	9	8	0.43	73747192	73094133	tier1	In-frame	8403	NA	0.3793
BRCA	TCGA-A8-A08O-01A	TCGA-A8-A08O	ITGB4\|NARF	ITGB4	NARF	17	17	1	1	3	2	2	1.3	73753188	80426640	tier1	Out-of-frame	8398	NA	0.37755
HNSC	TCGA-CV-5436-01A	TCGA-CV-5436	ITGB4\|PLEKHB2	ITGB4	PLEKHB2	17	2	1	1	2	14	9	0.26	73753898	131876464	tier3	3UTR-5UTR	8400	NA	0.37893
LUAD	TCGA-97-A4M3-01A	TCGA-97-A4M3	ITGB4\|SAP30BP	ITGB4	SAP30BP	17	17	1	1	2	2	2	0.53	73733725	73689520	tier4	In-frame	8402	NA	0.38
LUAD	TCGA-55-A4DF-01A	TCGA-55-A4DF	ITGB4\|TSPAN10	ITGB4	TSPAN10	17	17	1	1	3	4	4	0.39	73747192	79612018	tier1	Out-of-frame	8404	NA	0.37828
LUSC	TCGA-60-2722-01A	TCGA-60-2722	ITGB4\|OTOP2	ITGB4	OTOP2	17	17	1	1	6	2	2	0.13	73717692	72926374	tier1	5UTR-CDS	8399	non-validated	0.37835
OV	TCGA-61-1917-01A	TCGA-61-1917	ITGB4\|MYO15B	ITGB4	MYO15B	17	17	1	1	8	11	11	0.013	73717692	73620450	tier1	5UTR-CDS	8397	NA	0.3799
LGG	TCGA-HT-A61C-01A	TCGA-HT-A61C	H3F3B\|CCT5	H3F3B	CCT5	17	5	-1	1	2	14	13	4.3	73772517	10250033	tier3	3UTR-5UTR	7576	NA	0.36828
BRCA	TCGA-A7-A13D-01A	TCGA-A7-A13D	KDM6B\|TMEM95	KDM6B	TMEM95	17	17	1	1	34	7	6	0.007	7755383	7259711	tier1	Out-of-frame	8714	non-validated	0.32881
LUAD	TCGA-67-3770-01A	TCGA-67-3770	KDM6B\|DNAH2	KDM6B	DNAH2	17	17	1	1	5	1	1	0.27	7743342	7704896	tier3	5UTR-CDS	8713	NA	0.34114
BLCA	TCGA-XF-AAMQ-01A	TCGA-XF-AAMQ	MATN2\|SFMBT1	MATN2	SFMBT1	8	3	1	-1	3	6	6	0.65	98900470	52950230	tier1	Out-of-frame	10033	NA	0.36601
LIHC	TCGA-BD-A3ER-01A	TCGA-BD-A3ER	MATN2\|LAPTM4B	MATN2	LAPTM4B	8	8	1	1	27	10	10	0.46	99019829	98863625	tier1	Out-of-frame	10032	NA	0.36306
BRCA	TCGA-E9-A22D-01A	TCGA-E9-A22D	SDF2\|MAP2K6	SDF2	MAP2K6	17	17	-1	1	41	33	28	1.2	26982305	67532256	tier1	Out-of-frame	15480	NA	0

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