Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-D3-A51N-06A | TCGA-D3-A51N | MCCC2|NNT | MCCC2 | NNT | 5 | 5 | 1 | 1 | 23 | 34 | 25 | 0.07 | 70900295 | 43675613 | tier1 | In-frame | 10084 | NA | 0.33547 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | CHSY1|SPOCK2 | CHSY1 | SPOCK2 | 15 | 10 | -1 | -1 | 14 | 20 | 19 | 0.25 | 101775287 | 73832668 | tier1 | In-frame | 3721 | NA | 0.3517 |
| LUSC | TCGA-34-8456-01A | TCGA-34-8456 | CHSY1|PCSK6 | CHSY1 | PCSK6 | 15 | 15 | -1 | -1 | 3 | 3 | 3 | 2.4 | 101775287 | 101983865 | tier1 | In-frame | 3720 | NA | 0.35715 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | RAF1|TMEM40 | RAF1 | TMEM40 | 3 | 3 | -1 | -1 | 70 | 41 | 39 | 0.27 | 12705312 | 12784006 | tier4 | 5UTR-CDS | 14189 | NA | 0 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | RAF1|IQSEC1 | RAF1 | IQSEC1 | 3 | 3 | -1 | -1 | 11 | 7 | 7 | 3 | 12705312 | 12983365 | tier1 | 5UTR-CDS | 14184 | NA | 0 |
| BLCA | TCGA-DK-A6B5-01A | TCGA-DK-A6B5 | RAF1|NXPH1 | RAF1 | NXPH1 | 3 | 7 | -1 | 1 | 32 | 25 | 21 | 4.2 | 12705312 | 8790638 | tier1 | 5UTR-CDS | 14185 | NA | 0 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | RAF1|C9orf153 | RAF1 | C9orf153 | 3 | 9 | -1 | -1 | 4 | 9 | 9 | 0.32 | 12632297 | 88844544 | tier1 | CDS-5UTR | 14182 | NA | 0 |
| KIRC | TCGA-CJ-4635-01A | TCGA-CJ-4635 | RAF1|TMEM40 | RAF1 | TMEM40 | 3 | 3 | -1 | -1 | 21 | 4 | 4 | 0.27 | 12632297 | 12791339 | tier1 | CDS-5UTR | 14187 | NA | 0 |
| LUAD | TCGA-86-A456-01A | TCGA-86-A456 | RAF1|XPC | RAF1 | XPC | 3 | 3 | -1 | -1 | 4 | 2 | 1 | 1.6 | 12705312 | 14189501 | tier3 | 5UTR-CDS | 14192 | NA | 0 |
| PAAD | TCGA-IB-A5SS-01A | TCGA-IB-A5SS | RAF1|TMEM40 | RAF1 | TMEM40 | 3 | 3 | -1 | -1 | 8 | 6 | 4 | 0.27 | 12632297 | 12791339 | tier1 | CDS-5UTR | 14188 | NA | 0 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | RAF1|GXYLT2 | RAF1 | GXYLT2 | 3 | 3 | -1 | 1 | 4 | 8 | 8 | 4.7 | 12705312 | 72957518 | tier1 | 5UTR-CDS | 14183 | NA | 0 |
| PRAD | TCGA-HC-8256-01A | TCGA-HC-8256 | RAF1|PHC3 | RAF1 | PHC3 | 3 | 3 | -1 | -1 | 14 | 9 | 9 | 2.1 | 12641190 | 169815172 | tier1 | In-frame | 14186 | NA | 0 |
| SKCM | TCGA-EE-A2MI-06A | TCGA-EE-A2MI | RAF1|TRAK1 | RAF1 | TRAK1 | 3 | 3 | -1 | 1 | 65 | 39 | 37 | 2.2 | 12645635 | 42236296 | tier1 | In-frame | 14191 | non-validated | 0 |
| TGCT | TCGA-XE-AAO4-01A | TCGA-XE-AAO4 | RAF1|TMEM40 | RAF1 | TMEM40 | 3 | 3 | -1 | -1 | 9 | 1 | 1 | 0.27 | 12632297 | 12791339 | tier2 | CDS-5UTR | 14190 | NA | 0 |
| BLCA | TCGA-DK-AA75-01A | TCGA-DK-AA75 | PPARG|SYN2 | PPARG | SYN2 | 3 | 3 | 1 | 1 | 10 | 20 | 19 | 2.2 | 12330633 | 12187179 | tier1 | 5UTR-CDS | 13233 | NA | 0.38265 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | PPARG|SYN2 | PPARG | SYN2 | 3 | 3 | 1 | 1 | 50 | 140 | 135 | 2.2 | 12330633 | 12228869 | tier1 | 5UTR-CDS | 13234 | NA | 0.38265 |
| BLCA | TCGA-FD-A3SJ-01A | TCGA-FD-A3SJ | PPARG|SYN2 | PPARG | SYN2 | 3 | 3 | 1 | 1 | 27 | 23 | 21 | 2.2 | 12353952 | 12192737 | tier1 | 5UTR-CDS | 13235 | NA | 0.38265 |
| THCA | TCGA-BJ-A0YZ-01A | TCGA-BJ-A0YZ | PPARG|PAX8 | PPARG | PAX8 | 3 | 2 | 1 | -1 | 23 | 25 | 24 | 1 | 12353952 | 113984833 | tier1 | 5UTR-CDS | 13230 | NA | 0.38309 |
| THCA | TCGA-DE-A4M9-01A | TCGA-DE-A4M9 | PPARG|PAX8 | PPARG | PAX8 | 3 | 2 | 1 | -1 | 25 | 25 | 21 | 1 | 12353952 | 113984833 | tier4 | 5UTR-CDS | 13231 | NA | 0.38309 |
| THCA | TCGA-EM-A3AJ-01A | TCGA-EM-A3AJ | PPARG|PAX8 | PPARG | PAX8 | 3 | 2 | 1 | -1 | 34 | 25 | 24 | 1 | 12353952 | 113984833 | tier1 | 5UTR-CDS | 13232 | NA | 0.38309 |
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