TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LIHC	TCGA-NI-A4U2-01A	TCGA-NI-A4U2	IL13RA1\|DOCK11	IL13RA1	DOCK11	X	X	1	1	34	30	27	0.96	117900939	117796649	tier1	In-frame	8160	NA	0.36927
LUAD	TCGA-91-8499-01A	TCGA-91-8499	IL13RA1\|WDR44	IL13RA1	WDR44	X	X	1	1	160	102	96	0.59	117875119	117521303	tier2	In-frame	8161	NA	0.37503
PRAD	TCGA-J9-A8CL-01A	TCGA-J9-A8CL	IL13RA1\|DOCK11	IL13RA1	DOCK11	X	X	1	1	3	2	2	0.96	117875119	117727177	tier1	In-frame	8159	NA	0.36927
LUSC	TCGA-33-AASI-01A	TCGA-33-AASI	TNS4\|CCR7	TNS4	CCR7	17	17	-1	-1	145	112	5	1.1	38640736	38715194	tier1	In-frame	18418	NA	0
UCEC	TCGA-AJ-A3QS-01A	TCGA-AJ-A3QS	RARA\|LTBP1	RARA	LTBP1	17	2	1	1	2	3	3	0.018	38474700	33447147	tier2	5UTR-CDS	14314	NA	0
BRCA	TCGA-EW-A6S9-01A	TCGA-EW-A6S9	RARA\|COL10A1	RARA	COL10A1	17	6	1	-1	25	31	28	1.5	38487648	116446670	tier1	CDS-5UTR	14311	NA	0
BRCA	TCGA-A8-A0A7-01A	TCGA-A8-A0A7	RARA\|CA10	RARA	CA10	17	17	1	-1	105	104	96	0.12	38474700	50149753	tier1	5UTR-CDS	14306	NA	0
BRCA	TCGA-A2-A04W-01A	TCGA-A2-A04W	RARA\|CDK12	RARA	CDK12	17	17	1	1	19	18	17	0.28	38474700	37646810	tier1	5UTR-CDS	14309	NA	0
OV	TCGA-3P-A9WA-01A	TCGA-3P-A9WA	RARA\|CDK12	RARA	CDK12	17	17	1	1	5	89	76	0.28	38504716	37686857	tier1	Out-of-frame	14308	NA	0
BRCA	TCGA-EW-A1J3-01A	TCGA-EW-A1J3	RARA\|STAT3	RARA	STAT3	17	17	1	-1	72	19	19	0.17	38465538	40500557	tier1	5UTR-5UTR	14337	NA	0
BRCA	TCGA-AO-A12D-01A	TCGA-AO-A12D	RARA\|HOXB3	RARA	HOXB3	17	17	1	-1	15	9	6	1.8	38508759	46632980	tier1	CDS-5UTR	14312	NA	0
BRCA	TCGA-C8-A8HP-01A	TCGA-C8-A8HP	RARA\|LGALS16	RARA	LGALS16	17	19	1	1	12	4	4	0.86	38465538	40148523	tier1	5UTR-CDS	14313	NA	0
BRCA	TCGA-AR-A254-01A	TCGA-AR-A254	RARA\|MSL1	RARA	MSL1	17	17	1	1	145	71	62	0.15	38487648	38282436	tier1	CDS-5UTR	14315	NA	0
BRCA	TCGA-A8-A09I-01A	TCGA-A8-A09I	RARA\|MYO1D	RARA	MYO1D	17	17	1	-1	100	56	48	0.18	38487648	31107802	tier1	Out-of-frame	14316	non-validated	0
BRCA	TCGA-A2-A0D4-01A	TCGA-A2-A0D4	RARA\|PCTP	RARA	PCTP	17	17	1	1	68	31	31	0.95	38474700	53848467	tier1	5UTR-CDS	14317	non-validated	0
BRCA	TCGA-AN-A0FV-01A	TCGA-AN-A0FV	RARA\|PCTP	RARA	PCTP	17	17	1	1	2277	1614	1542	0.95	38474700	53848467	tier1	5UTR-CDS	14318	NA	0
BRCA	TCGA-A8-A08B-01A	TCGA-A8-A08B	RARA\|PGAP3	RARA	PGAP3	17	17	1	-1	9	9	5	0.32	38474700	37830932	tier1	5UTR-CDS	14319	non-validated	0
BRCA	TCGA-A2-A0YG-01A	TCGA-A2-A0YG	RARA\|PRR11	RARA	PRR11	17	17	1	1	1897	2484	2323	0.071	38474700	57247109	tier1	5UTR-5UTR	14331	non-validated	0
BRCA	TCGA-EW-A1J3-01A	TCGA-EW-A1J3	RARA\|PSMD3	RARA	PSMD3	17	17	1	1	142	62	51	0.074	38487648	38151207	tier1	Out-of-frame	14332	NA	0
BRCA	TCGA-BH-A0DD-01A	TCGA-BH-A0DD	RARA\|RP11-1407O15.2	RARA	RP11-1407O15.2	17	17	1	-1	26	13	11	0.2	38474700	36359042	tier1	5UTR-CDS	14333	NA	0

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