Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-50-8460-01A | TCGA-50-8460 | NAPSA|CLCN3 | NAPSA | CLCN3 | 19 | 4 | -1 | 1 | 2 | 260 | 186 | 1.2 | 50861735 | 170623929 | tier3 | NA | 11092 | NA | 0.3662 |
| LUAD | TCGA-55-8206-01A | TCGA-55-8206 | NAPSA|DDX27 | NAPSA | DDX27 | 19 | 20 | -1 | 1 | 2 | 172 | 139 | 0.13 | 50861735 | 47849303 | tier2 | NA | 11093 | NA | 0.36131 |
| LUAD | TCGA-55-A494-01A | TCGA-55-A494 | NAPSA|RNF213 | NAPSA | RNF213 | 19 | 17 | -1 | 1 | 2 | 3 | 2 | 0.076 | 50861735 | 78261614 | tier3 | 3UTR-CDS | 11094 | NA | 0.35111 |
| LUAD | TCGA-69-7974-01A | TCGA-69-7974 | NAPSA|SEC63 | NAPSA | SEC63 | 19 | 6 | -1 | -1 | 2 | 49 | 42 | 1.1 | 50861735 | 108214782 | tier4 | NA | 11095 | NA | 0.35355 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | ACLY|WEE1 | ACLY | WEE1 | 17 | 11 | -1 | 1 | 10 | 46 | 42 | 0.5 | 40030064 | 9609996 | tier1 | In-frame | 270 | NA | 0.38382 |
| SARC | TCGA-WK-A8Y0-01A | TCGA-WK-A8Y0 | ACLY|TAF15 | ACLY | TAF15 | 17 | 17 | -1 | 1 | 366 | 170 | 157 | 0.095 | 40054002 | 34163136 | tier1 | In-frame | 269 | NA | 0.38054 |
| BRCA | TCGA-D8-A1JM-01A | TCGA-D8-A1JM | ACLY|DNAJC7 | ACLY | DNAJC7 | 17 | 17 | -1 | -1 | 4 | 7 | 6 | 1.1 | 40054884 | 40129341 | tier1 | Out-of-frame | 266 | NA | 0.37966 |
| BRCA | TCGA-LL-A6FR-01A | TCGA-LL-A6FR | ACLY|DNAJC7 | ACLY | DNAJC7 | 17 | 17 | -1 | -1 | 219 | 438 | 394 | 1.1 | 40057949 | 40129341 | tier1 | In-frame | 267 | NA | 0.37966 |
| ESCA | TCGA-VR-AA4D-01A | TCGA-VR-AA4D | ACLY|NEUROD2 | ACLY | NEUROD2 | 17 | 17 | -1 | -1 | 14 | 58 | 46 | 0.47 | 40039375 | 37762857 | tier1 | CDS-5UTR | 268 | NA | 0.3706 |
| BRCA | TCGA-A7-A56D-01A | TCGA-A7-A56D | NDFIP1|NDUFAF2 | NDFIP1 | NDUFAF2 | 5 | 5 | 1 | 1 | 2 | 20 | 17 | 100 | 141524241 | 60448531 | tier2 | 3UTR-CDS | 11274 | NA | 0.3403 |
| LUSC | TCGA-68-A59J-01A | TCGA-68-A59J | ANO1|SLC7A8 | ANO1 | SLC7A8 | 11 | 14 | 1 | -1 | 32 | 26 | 21 | 0.72 | 70017145 | 23635749 | tier1 | In-frame | 1025 | NA | 0.35053 |
| BRCA | TCGA-C8-A138-01A | TCGA-C8-A138 | ANO1|ABCC11 | ANO1 | ABCC11 | 11 | 16 | 1 | -1 | 4 | 1 | 1 | 0.24 | 69972301 | 48211024 | tier2 | Out-of-frame | 1017 | NA | 0.34678 |
| TGCT | TCGA-2G-AAGP-01A | TCGA-2G-AAGP | ANO1|CDC42BPG | ANO1 | CDC42BPG | 11 | 11 | 1 | -1 | 6 | 1 | 1 | 0.28 | 69951894 | 64606374 | tier4 | In-frame | 1019 | NA | 0.3714 |
| BRCA | TCGA-A8-A097-01A | TCGA-A8-A097 | ANO1|CYP2R1 | ANO1 | CYP2R1 | 11 | 11 | 1 | -1 | 6 | 5 | 5 | 1 | 69924820 | 14907463 | tier1 | In-frame | 1021 | NA | 0.34532 |
| LUSC | TCGA-56-8083-01A | TCGA-56-8083 | ANO1|FGF3 | ANO1 | FGF3 | 11 | 11 | 1 | -1 | 97 | 39 | 37 | 0.15 | 69972301 | 69631191 | tier1 | Out-of-frame | 1022 | NA | 0.36372 |
| BLCA | TCGA-CF-A8HX-01A | TCGA-CF-A8HX | ANO1|CWF19L2 | ANO1 | CWF19L2 | 11 | 11 | 1 | -1 | 8 | 13 | 12 | 0.56 | 69978185 | 107313775 | tier1 | Out-of-frame | 1020 | NA | 0.34473 |
| BRCA | TCGA-C8-A1HK-01A | TCGA-C8-A1HK | ANO1|ABHD15 | ANO1 | ABHD15 | 11 | 17 | 1 | -1 | 37 | 40 | 36 | 0.16 | 70028792 | 27890104 | tier1 | In-frame | 1018 | NA | 0.33747 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | ANO1|UNC5D | ANO1 | UNC5D | 11 | 8 | 1 | 1 | 14 | 20 | 17 | 5.2 | 70017145 | 35406810 | tier1 | In-frame | 1026 | NA | 0.35621 |
| ESCA | TCGA-IG-A3I8-01A | TCGA-IG-A3I8 | ANO1|RP11-680F20.9 | ANO1 | RP11-680F20.9 | 11 | 11 | 1 | -1 | 16 | 25 | 24 | 0.027 | 69972301 | 125796001 | tier1 | CDS-5UTR | 1024 | NA | 0.33747 |
| SKCM | TCGA-EB-A5SH-06A | TCGA-EB-A5SH | ANO1|KIF21A | ANO1 | KIF21A | 11 | 12 | 1 | -1 | 5 | 4 | 3 | 1.1 | 69924820 | 39705355 | tier1 | Out-of-frame | 1023 | NA | 0.35053 |
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