Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-21-1082-01A | TCGA-21-1082 | TRIM28|ZBTB45 | TRIM28 | ZBTB45 | 19 | 19 | 1 | -1 | 26 | 19 | 16 | 0.86 | 59056464 | 59029040 | tier4 | Out-of-frame | 18627 | non-validated | 0 |
| PRAD | TCGA-ZG-A9LM-01A | TCGA-ZG-A9LM | MAP3K10|ALDH16A1 | MAP3K10 | ALDH16A1 | 19 | 19 | 1 | 1 | 30 | 40 | 39 | 0.38 | 40698620 | 49971638 | tier1 | Out-of-frame | 9850 | NA | 0.38408 |
| BRCA | TCGA-UL-AAZ6-01A | TCGA-UL-AAZ6 | MAP3K10|PCMTD2 | MAP3K10 | PCMTD2 | 19 | 20 | 1 | 1 | 8 | 6 | 6 | 0.47 | 40704462 | 62904574 | tier1 | Out-of-frame | 9852 | NA | 0.38283 |
| LGG | TCGA-S9-A6U0-01A | TCGA-S9-A6U0 | MAP3K10|SUPT5H | MAP3K10 | SUPT5H | 19 | 19 | 1 | 1 | 16 | 16 | 12 | 0.003 | 40712064 | 39948315 | tier1 | In-frame | 9853 | NA | 0.38729 |
| LUSC | TCGA-85-A510-01A | TCGA-85-A510 | MAP3K10|C19orf47 | MAP3K10 | C19orf47 | 19 | 19 | 1 | -1 | 147 | 123 | 111 | 0.074 | 40715126 | 40847797 | tier1 | Out-of-frame | 9851 | NA | 0 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | DNMT1|ICAM3 | DNMT1 | ICAM3 | 19 | 19 | -1 | -1 | 4 | 2 | 2 | 1.2 | 10283766 | 10446652 | tier1 | Out-of-frame | 5006 | NA | 0.378 |
| BLCA | TCGA-FJ-A3ZE-01A | TCGA-FJ-A3ZE | DNMT1|EMR1 | DNMT1 | EMR1 | 19 | 19 | -1 | 1 | 2 | 4 | 4 | 0.17 | 10266529 | 6890492 | tier3 | In-frame | 5003 | NA | 0.37161 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | DNMT1|FDX1L | DNMT1 | FDX1L | 19 | 19 | -1 | -1 | 3 | 1 | 1 | 0.37 | 10283766 | 10421616 | tier4 | Out-of-frame | 5004 | NA | 0.3655 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | DNMT1|AP1M1 | DNMT1 | AP1M1 | 19 | 19 | -1 | 1 | 4 | 5 | 5 | 0.46 | 10254442 | 16344304 | tier1 | Out-of-frame | 5002 | NA | 0.37394 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | DNMT1|RAVER1 | DNMT1 | RAVER1 | 19 | 19 | -1 | -1 | 4 | 9 | 9 | 0.69 | 10254442 | 10441202 | tier1 | Out-of-frame | 5007 | NA | 0.37323 |
| UVM | TCGA-V4-A9EX-01A | TCGA-V4-A9EX | DNMT1|FDX1L | DNMT1 | FDX1L | 19 | 19 | -1 | -1 | 4 | 1 | 1 | 0.37 | 10283766 | 10426435 | tier2 | Out-of-frame | 5005 | NA | 0.3655 |
| SARC | TCGA-DX-A1KX-01A | TCGA-DX-A1KX | SLC6A8|PREP | SLC6A8 | PREP | X | 6 | 1 | -1 | 2 | 6 | 4 | 1.4 | 152954291 | 105845802 | tier2 | Out-of-frame | 16283 | NA | 0 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | PNCK|HCFC1 | PNCK | HCFC1 | X | X | -1 | -1 | 18 | 3 | 3 | 0.18 | 152952886 | 153230177 | tier1 | NA | 13119 | validated | 0.36281 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | HSD17B3|ENPP2 | HSD17B3 | ENPP2 | 9 | 8 | -1 | -1 | 2 | 2 | 2 | 1.6 | 99060698 | 120638960 | tier2 | Out-of-frame | 7977 | NA | 0.3509 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | PPIL4|CLEC4A | PPIL4 | CLEC4A | 6 | 12 | -1 | 1 | 26 | 15 | 14 | 0.35 | 149846279 | 8288181 | tier1 | Out-of-frame | 13299 | NA | 0.36399 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | LATS1|LACE1 | LATS1 | LACE1 | 6 | 6 | -1 | 1 | 68 | 49 | 47 | 0.37 | 150038985 | 108723200 | tier1 | 5UTR-CDS | 9246 | non-validated | 0.37954 |
| LUSC | TCGA-66-2800-01A | TCGA-66-2800 | C1QL1|SLC16A5 | C1QL1 | SLC16A5 | 17 | 17 | -1 | 1 | 19 | 7 | 5 | 0.11 | 43044820 | 73094133 | tier1 | Out-of-frame | 2626 | NA | 0.3496 |
| UCS | TCGA-N7-A59B-01A | TCGA-N7-A59B | PPT1|HIVEP3 | PPT1 | HIVEP3 | 1 | 1 | -1 | -1 | 4 | 1 | 1 | 1.2 | 40555082 | 42166666 | tier2 | CDS-5UTR | 13475 | NA | 0.37071 |
| CESC | TCGA-VS-A8EI-01A | TCGA-VS-A8EI | KCNC3|PRKDC | KCNC3 | PRKDC | 19 | 8 | -1 | -1 | 2 | 4 | 4 | 0.75 | 50823850 | 48730122 | tier4 | In-frame | 8571 | NA | 0.37952 |
| BRCA | TCGA-EW-A6S9-01A | TCGA-EW-A6S9 | KCNC3|ASPDH | KCNC3 | ASPDH | 19 | 19 | -1 | -1 | 2 | 1 | 1 | 0.057 | 50831470 | 51015547 | tier2 | Out-of-frame | 8570 | NA | 0.3343 |
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