Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-EW-A2FV-01A | TCGA-EW-A2FV | PAK4|SPINT2 | PAK4 | SPINT2 | 19 | 19 | 1 | 1 | 27 | 71 | 49 | 0.18 | 39616559 | 38774267 | tier2 | 5UTR-CDS | 12221 | NA | 0.38098 |
| BRCA | TCGA-AC-A8OP-01A | TCGA-AC-A8OP | PAK4|AC011443.1 | PAK4 | AC011443.1 | 19 | 19 | 1 | 1 | 7 | 1 | 1 | 0.3 | 39616559 | 39575732 | tier4 | 5UTR-5UTR | 12215 | NA | 0.37821 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | PAK4|CATSPERG | PAK4 | CATSPERG | 19 | 19 | 1 | 1 | 40 | 31 | 28 | 0.13 | 39616559 | 38848918 | tier1 | 5UTR-CDS | 12218 | NA | 0.37821 |
| BRCA | TCGA-E2-A14R-01A | TCGA-E2-A14R | PAK4|HEATR8 | PAK4 | HEATR8 | 19 | 1 | 1 | 1 | 4 | 4 | 2 | 0.6 | 39616559 | 55182273 | tier1 | NA | 12219 | NA | 0.37821 |
| PAAD | TCGA-L1-A7W4-01A | TCGA-L1-A7W4 | PAK4|B9D1 | PAK4 | B9D1 | 19 | 17 | 1 | -1 | 56 | 29 | 24 | 0.091 | 39616559 | 19251193 | tier1 | 5UTR-CDS | 12217 | NA | 0.38068 |
| UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | PAK4|AC011443.1 | PAK4 | AC011443.1 | 19 | 19 | 1 | 1 | 8 | 2 | 2 | 0.3 | 39616559 | 39575732 | tier1 | 5UTR-5UTR | 12216 | NA | 0.37821 |
| UCS | TCGA-N8-A4PN-01A | TCGA-N8-A4PN | PAK4|RPGR | PAK4 | RPGR | 19 | X | 1 | -1 | 14 | 4 | 4 | 0.14 | 39616559 | 38150737 | tier1 | 5UTR-CDS | 12220 | NA | 0.38173 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | LAMA5|WFDC2 | LAMA5 | WFDC2 | 20 | 20 | -1 | 1 | 2 | 30 | 1 | 0.33 | 60885044 | 44098396 | tier4 | CDS-5UTR | 9206 | NA | 0.36295 |
| READ | TCGA-F5-6465-01A | TCGA-F5-6465 | LAMA5|CLCN7 | LAMA5 | CLCN7 | 20 | 16 | -1 | -1 | 2 | 3 | 3 | 0.012 | 60900372 | 1509188 | tier4 | In-frame | 9201 | NA | 0.36388 |
| READ | TCGA-G5-6572-01A | TCGA-G5-6572 | LAMA5|CLCN7 | LAMA5 | CLCN7 | 20 | 16 | -1 | -1 | 3 | 3 | 3 | 0.012 | 60900372 | 1509188 | tier1 | In-frame | 9202 | NA | 0.36388 |
| OV | TCGA-04-1362-01A | TCGA-04-1362 | LAMA5|NCOR2 | LAMA5 | NCOR2 | 20 | 12 | -1 | -1 | 8 | 4 | 4 | 0.084 | 60926760 | 124841352 | tier1 | Out-of-frame | 9203 | NA | 0.38055 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | LAMA5|C12orf28 | LAMA5 | C12orf28 | 20 | 12 | -1 | 1 | 36 | 28 | 26 | 0.36 | 60937456 | 70272808 | tier1 | CDS-5UTR | 9194 | NA | 0 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | LAMA5|C20orf151 | LAMA5 | C20orf151 | 20 | 20 | -1 | -1 | 30 | 17 | 14 | 0.008 | 60905544 | 60992375 | tier1 | Out-of-frame | 9195 | NA | 0 |
| BRCA | TCGA-D8-A27F-01A | TCGA-D8-A27F | LAMA5|UBN1 | LAMA5 | UBN1 | 20 | 16 | -1 | 1 | 56 | 65 | 55 | 0.21 | 60937456 | 4918834 | tier1 | In-frame | 9205 | non-validated | 0.36066 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | LAMA5|CABLES2 | LAMA5 | CABLES2 | 20 | 20 | -1 | -1 | 4 | 5 | 4 | 0.036 | 60926760 | 60970070 | tier1 | In-frame | 9199 | non-validated | 0.37421 |
| LUSC | TCGA-O2-A52N-01A | TCGA-O2-A52N | LAMA5|C20orf151 | LAMA5 | C20orf151 | 20 | 20 | -1 | -1 | 367 | 258 | 197 | 0.008 | 60905544 | 60994786 | tier1 | CDS-5UTR | 9198 | NA | 0 |
| PAAD | TCGA-IB-7644-01A | TCGA-IB-7644 | LAMA5|CABLES2 | LAMA5 | CABLES2 | 20 | 20 | -1 | -1 | 87 | 99 | 89 | 0.036 | 60926760 | 60971648 | tier1 | In-frame | 9200 | NA | 0.37421 |
| UCEC | TCGA-B5-A1MS-01B | TCGA-B5-A1MS | LAMA5|C20orf151 | LAMA5 | C20orf151 | 20 | 20 | -1 | -1 | 14 | 23 | 19 | 0.008 | 60908431 | 60986052 | tier1 | Out-of-frame | 9196 | NA | 0 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | LAMA5|C20orf151 | LAMA5 | C20orf151 | 20 | 20 | -1 | -1 | 33 | 12 | 12 | 0.008 | 60911790 | 60992375 | tier1 | Out-of-frame | 9197 | NA | 0 |
| UCS | TCGA-N6-A4VG-01A | TCGA-N6-A4VG | LAMA5|SEC63 | LAMA5 | SEC63 | 20 | 6 | -1 | -1 | 2 | 2 | 2 | 0.75 | 60884121 | 108214782 | tier4 | NA | 9204 | NA | 0.36489 |
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