TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BLCA	TCGA-E7-A541-01A	TCGA-E7-A541	ACTN4\|EIF3K	ACTN4	EIF3K	19	19	1	1	177	148	128	0.18	39138547	39123070	tier1	In-frame	377	NA	0.375
BRCA	TCGA-BH-A0B9-01A	TCGA-BH-A0B9	ACTN4\|CAPZB	ACTN4	CAPZB	19	1	1	-1	65	37	34	0.03	39207956	19712120	tier1	In-frame	374	non-validated	0.37721
BRCA	TCGA-E2-A150-01A	TCGA-E2-A150	ACTN4\|FTO	ACTN4	FTO	19	16	1	1	194	217	207	0.17	39138547	53844052	tier1	In-frame	380	NA	0.37585
LUAD	TCGA-55-A4DF-01A	TCGA-55-A4DF	ACTN4\|YIF1B	ACTN4	YIF1B	19	19	1	-1	60	37	35	0.042	39138547	38800283	tier1	Out-of-frame	384	NA	0.3752
LUSC	TCGA-22-1005-01A	TCGA-22-1005	ACTN4\|CATSPERG	ACTN4	CATSPERG	19	19	1	1	32	11	9	0.22	39200116	38834220	tier1	Out-of-frame	375	NA	0.37315
LUSC	TCGA-63-A5MM-01A	TCGA-63-A5MM	ACTN4\|EIF3K	ACTN4	EIF3K	19	19	1	1	156	163	145	0.18	39138547	39123070	tier1	In-frame	376	NA	0.375
SARC	TCGA-HS-A5N8-01A	TCGA-HS-A5N8	ACTN4\|EIF3K	ACTN4	EIF3K	19	19	1	1	64	57	50	0.18	39138547	39116668	tier1	In-frame	379	NA	0.375
SKCM	TCGA-GN-A268-06A	TCGA-GN-A268	ACTN4\|EIF3K	ACTN4	EIF3K	19	19	1	1	46	13	9	0.18	39138547	39125633	tier1	Out-of-frame	378	NA	0.375
BLCA	TCGA-FD-A3SP-01A	TCGA-FD-A3SP	PXDN\|UTRN	PXDN	UTRN	2	6	-1	1	2	7	7	3	1635659	144665237	tier3	NA	13981	NA	0
BLCA	TCGA-KQ-A41N-01A	TCGA-KQ-A41N	TRPM4\|PPFIA3	TRPM4	PPFIA3	19	19	1	1	17	8	8	0.056	49675365	49636258	tier2	Out-of-frame	18730	NA	0
BRCA	TCGA-AC-A3W5-01A	TCGA-AC-A3W5	TRPM4\|PPFIA3	TRPM4	PPFIA3	19	19	1	1	27	19	19	0.056	49675365	49636258	tier1	Out-of-frame	18726	NA	0
CESC	TCGA-C5-A8XK-01A	TCGA-C5-A8XK	TRPM4\|PPFIA3	TRPM4	PPFIA3	19	19	1	1	4	6	4	0.056	49675365	49636258	tier4	Out-of-frame	18728	NA	0
HNSC	TCGA-T2-A6WX-01A	TCGA-T2-A6WX	TRPM4\|PPFIA3	TRPM4	PPFIA3	19	19	1	1	8	13	12	0.056	49675365	49636258	tier1	Out-of-frame	18732	NA	0
KIRP	TCGA-B1-7332-01A	TCGA-B1-7332	TRPM4\|PPFIA3	TRPM4	PPFIA3	19	19	1	1	3	5	4	0.056	49675365	49636258	tier1	Out-of-frame	18727	NA	0
PCPG	TCGA-QT-A5XJ-01A	TCGA-QT-A5XJ	TRPM4\|PPFIA3	TRPM4	PPFIA3	19	19	1	1	8	7	6	0.056	49675365	49636258	tier2	Out-of-frame	18731	NA	0
PRAD	TCGA-KK-A8I5-01A	TCGA-KK-A8I5	TRPM4\|PPFIA3	TRPM4	PPFIA3	19	19	1	1	19	32	29	0.056	49675365	49636258	tier1	Out-of-frame	18729	NA	0
ACC	TCGA-P6-A5OG-01A	TCGA-P6-A5OG	COL5A1\|DDX21	COL5A1	DDX21	9	10	1	1	2	4	4	1.4	137734719	70723858	tier4	NA	4037	NA	0.37433
BLCA	TCGA-GD-A3OS-01A	TCGA-GD-A3OS	COL5A1\|PTGES2	COL5A1	PTGES2	9	9	1	-1	130	114	98	0.2	137677894	130887720	tier1	In-frame	4038	NA	0.36724
LUSC	TCGA-56-8201-01A	TCGA-56-8201	COL5A1\|UVRAG	COL5A1	UVRAG	9	11	1	1	2	2	1	1.2	137734719	75694431	tier3	3UTR-CDS	4039	NA	0.36445
UCS	TCGA-N6-A4VG-01A	TCGA-N6-A4VG	COL5A1\|DDX21	COL5A1	DDX21	9	10	1	1	2	4	1	1.4	137736686	70723858	tier4	NA	4036	NA	0.37433

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