TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
ACC	TCGA-OR-A5K9-01A	TCGA-OR-A5K9	APOE\|CLCN3	APOE	CLCN3	19	4	1	1	2	220	163	3.6	45412650	170623929	tier4	NA	1142	NA	0.3699
KIRC	TCGA-A3-3313-01A	TCGA-A3-3313	APOE\|CCT5	APOE	CCT5	19	5	1	1	2	8	5	2	45412650	10250033	tier3	3UTR-5UTR	1140	NA	0.37393
LIHC	TCGA-G3-A25U-01A	TCGA-G3-A25U	APOE\|ARFGEF2	APOE	ARFGEF2	19	20	1	1	2	42	36	0.11	45412650	47615777	tier4	3UTR-CDS	1139	NA	0.37044
LIHC	TCGA-DD-A1EI-01A	TCGA-DD-A1EI	APOE\|CCT5	APOE	CCT5	19	5	1	1	2	45	35	2	45412650	10250033	tier3	3UTR-5UTR	1141	non-validated	0.37393
LIHC	TCGA-DD-AACJ-01A	TCGA-DD-AACJ	APOE\|DSP	APOE	DSP	19	6	1	1	2	1	1	0.13	45412650	7575528	tier3	3UTR-CDS	1143	NA	0.36909
LIHC	TCGA-DD-A4NR-01A	TCGA-DD-A4NR	APOE\|IQGAP2	APOE	IQGAP2	19	5	1	1	2	1	1	0.075	45412650	75700249	tier3	NA	1144	NA	0.37878
LIHC	TCGA-BC-A8YO-01A	TCGA-BC-A8YO	APOE\|SNW1	APOE	SNW1	19	14	1	-1	2	22	16	100	45412650	78189203	tier4	3UTR-CDS	1145	NA	0.37023
LIHC	TCGA-2Y-A9HB-01A	TCGA-2Y-A9HB	APOC1\|SLC38A4	APOC1	SLC38A4	19	12	1	-1	2	3	1	0.74	45422606	47226191	tier3	NA	1137	NA	0.34582
LUAD	TCGA-86-A4P7-01A	TCGA-86-A4P7	APOC1\|IQCE	APOC1	IQCE	19	7	1	1	2	19	15	0.38	45422606	2641075	tier4	3UTR-CDS	1135	NA	0.35472
SKCM	TCGA-D3-A1QB-06A	TCGA-D3-A1QB	APOC1\|RABEP1	APOC1	RABEP1	19	17	1	1	2	37	35	0.086	45422606	5283828	tier4	NA	1136	NA	0.3625
PCPG	TCGA-WB-A81W-01A	TCGA-WB-A81W	DPP6\|GGNBP2	DPP6	GGNBP2	7	17	1	1	16	29	24	1.7	154172122	34937774	tier1	Out-of-frame	5084	NA	0.34992
PCPG	TCGA-QR-A70V-01A	TCGA-QR-A70V	DPP6\|IFIT3	DPP6	IFIT3	7	10	1	1	13	5	5	1.5	154461151	91098418	tier1	Out-of-frame	5085	NA	0.3545
COAD	TCGA-AZ-6605-01A	TCGA-AZ-6605	ACE2\|GPR143	ACE2	GPR143	X	X	-1	-1	112	50	47	0.76	15596212	9693880	tier1	In-frame	257	NA	0.35036
BRCA	TCGA-E9-A1RG-01A	TCGA-E9-A1RG	NCAN\|NR2F6	NCAN	NR2F6	19	19	1	-1	47	21	17	1.4	19322873	17351574	tier1	5UTR-CDS	11147	NA	0.38047
LGG	TCGA-TM-A7CF-02A	TCGA-TM-A7CF	NCAN\|NOSIP	NCAN	NOSIP	19	19	1	-1	3	5	5	0.86	19345905	50063949	tier1	CDS-5UTR	11146	non-validated	0.37323
SKCM	TCGA-D3-A3CC-06A	TCGA-D3-A3CC	SLC27A1\|SUV420H2	SLC27A1	SUV420H2	19	19	1	1	7	2	2	0.083	17581516	55857581	tier1	Out-of-frame	16123	NA	0
UCS	TCGA-NF-A4WX-01A	TCGA-NF-A4WX	SLC27A1\|KIAA0391	SLC27A1	KIAA0391	19	14	1	1	27	9	9	1.2	17599926	35735933	tier1	In-frame	16122	NA	0
PRAD	TCGA-EJ-A46E-01A	TCGA-EJ-A46E	ACTN4\|MGST2	ACTN4	MGST2	19	4	1	1	5	7	7	0.14	39138547	140616351	tier1	Out-of-frame	381	NA	0.37464
GBM	TCGA-14-1034-02B	TCGA-14-1034	ACTN4\|TXNDC12	ACTN4	TXNDC12	19	1	1	-1	6	7	7	1.5	39138547	52507269	tier1	Out-of-frame	383	non-validated	0.37551
LIHC	TCGA-ED-A7PX-01A	TCGA-ED-A7PX	ACTN4\|RYR1	ACTN4	RYR1	19	19	1	1	6	10	10	0.22	39138547	39051753	tier1	In-frame	382	NA	0.37895

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