Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | ASH2L|C20orf72 | ASH2L | C20orf72 | 8 | 20 | 1 | 1 | 25 | 17 | 17 | 0.067 | 37971805 | 17968809 | tier2 | Out-of-frame | 1532 | NA | 0 |
| BRCA | TCGA-LL-A7T0-01A | TCGA-LL-A7T0 | ASH2L|ZFYVE28 | ASH2L | ZFYVE28 | 8 | 4 | 1 | -1 | 11 | 9 | 6 | 0.12 | 37976881 | 2343342 | tier1 | Out-of-frame | 1536 | NA | 0.36382 |
| HNSC | TCGA-CR-7364-01A | TCGA-CR-7364 | ASH2L|C8orf86 | ASH2L | C8orf86 | 8 | 8 | 1 | -1 | 6 | 6 | 6 | 0.79 | 37968351 | 38374030 | tier1 | In-frame | 1534 | NA | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | ASH2L|CASS4 | ASH2L | CASS4 | 8 | 20 | 1 | 1 | 21 | 13 | 11 | 0.091 | 37991064 | 55020956 | tier1 | In-frame | 1535 | non-validated | 0.36694 |
| KIRP | TCGA-B9-A8YI-01A | TCGA-B9-A8YI | LBP|BPI | LBP | BPI | 20 | 20 | 1 | 1 | 2 | 1 | 1 | 2.4 | 36983809 | 36952272 | tier3 | In-frame | 9250 | NA | 0.34845 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | LBP|BPI | LBP | BPI | 20 | 20 | 1 | 1 | 520 | 474 | 415 | 2.4 | 36983809 | 36952272 | tier1 | In-frame | 9251 | NA | 0.34845 |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | TNNI3|ZNF607 | TNNI3 | ZNF607 | 19 | 19 | -1 | -1 | 3 | 1 | 1 | 0.037 | 55668947 | 38200723 | tier2 | Out-of-frame | 18360 | NA | 0 |
| SARC | TCGA-IE-A4EI-01A | TCGA-IE-A4EI | PHF10|C6orf70 | PHF10 | C6orf70 | 6 | 6 | -1 | 1 | 2 | 2 | 2 | 1.6 | 170123941 | 170166734 | tier3 | In-frame | 12697 | non-validated | 0 |
| LUAD | TCGA-49-AAR4-01A | TCGA-49-AAR4 | LDLR|SMARCA4 | LDLR | SMARCA4 | 19 | 19 | 1 | 1 | 25 | 7 | 7 | 0.31 | 11234020 | 11172460 | tier1 | Out-of-frame | 9270 | NA | 0.38729 |
| ACC | TCGA-OR-A5K5-01A | TCGA-OR-A5K5 | LDLR|CCDC130 | LDLR | CCDC130 | 19 | 19 | 1 | 1 | 62 | 31 | 29 | 1.1 | 11200291 | 13842989 | tier1 | CDS-5UTR | 9266 | NA | 0.37357 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | LDLR|TNPO2 | LDLR | TNPO2 | 19 | 19 | 1 | -1 | 35 | 7 | 5 | 0.98 | 11240346 | 12834179 | tier1 | CDS-5UTR | 9271 | NA | 0.3745 |
| HNSC | TCGA-CN-5367-01A | TCGA-CN-5367 | LDLR|DNM2 | LDLR | DNM2 | 19 | 19 | 1 | 1 | 27 | 18 | 15 | 0.087 | 11240346 | 10935733 | tier1 | In-frame | 9268 | NA | 0.38409 |
| LUAD | TCGA-55-6972-01A | TCGA-55-6972 | LDLR|C19orf38 | LDLR | C19orf38 | 19 | 19 | 1 | 1 | 2 | 4 | 4 | 0.71 | 11211021 | 10968992 | tier3 | In-frame | 9265 | non-validated | 0 |
| SARC | TCGA-IE-A6BZ-01A | TCGA-IE-A6BZ | LDLR|TNPO2 | LDLR | TNPO2 | 19 | 19 | 1 | -1 | 12 | 3 | 3 | 0.98 | 11234020 | 12817609 | tier1 | In-frame | 9272 | NA | 0.3745 |
| SKCM | TCGA-WE-A8ZT-06A | TCGA-WE-A8ZT | LDLR|DNM2 | LDLR | DNM2 | 19 | 19 | 1 | 1 | 13 | 8 | 7 | 0.087 | 11231198 | 10922940 | tier1 | Out-of-frame | 9269 | NA | 0.38409 |
| UCEC | TCGA-AJ-A3NH-01A | TCGA-AJ-A3NH | LDLR|DNM2 | LDLR | DNM2 | 19 | 19 | 1 | 1 | 10 | 6 | 5 | 0.087 | 11200291 | 10935733 | tier1 | Out-of-frame | 9267 | NA | 0.38409 |
| LIHC | TCGA-ED-A7XO-01A | TCGA-ED-A7XO | PVRL2|CCL21 | PVRL2 | CCL21 | 19 | 9 | 1 | -1 | 35 | 31 | 30 | 0.024 | 45349870 | 34709894 | tier1 | In-frame | 13972 | NA | 0 |
| BLCA | TCGA-UY-A8OB-01A | TCGA-UY-A8OB | PVRL2|IGSF23 | PVRL2 | IGSF23 | 19 | 19 | 1 | 1 | 69 | 54 | 46 | 1.2 | 45368917 | 45138701 | tier1 | Out-of-frame | 13974 | NA | 0 |
| LUAD | TCGA-62-A46V-01A | TCGA-62-A46V | PVRL2|ZMAT2 | PVRL2 | ZMAT2 | 19 | 5 | 1 | 1 | 4 | 5 | 5 | 0.17 | 45377735 | 140083503 | tier1 | Out-of-frame | 13975 | NA | 0 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | PVRL2|CEACAM19 | PVRL2 | CEACAM19 | 19 | 19 | 1 | 1 | 19 | 18 | 17 | 0.8 | 45349870 | 45175868 | tier1 | In-frame | 13973 | NA | 0 |
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