Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-EM-A1YE-01A | TCGA-EM-A1YE | POR|PIBF1 | POR | PIBF1 | 7 | 13 | 1 | 1 | 2 | 2 | 2 | 0.99 | 75616172 | 73410241 | tier4 | NA | 13189 | NA | 0.35118 |
| SKCM | TCGA-EE-A183-06A | TCGA-EE-A183 | PPAT|KIF16B | PPAT | KIF16B | 4 | 20 | -1 | -1 | 3 | 5 | 5 | 0.69 | 57301516 | 16509085 | tier1 | In-frame | 13238 | NA | 0.34183 |
| KIRP | TCGA-BQ-5875-01A | TCGA-BQ-5875 | VGF|CLCN3 | VGF | CLCN3 | 7 | 4 | -1 | 1 | 2 | 30 | 28 | 2.1 | 100805797 | 170623929 | tier4 | NA | 19552 | NA | 0 |
| SKCM | TCGA-D3-A2J6-06A | TCGA-D3-A2J6 | VGF|SIAE | VGF | SIAE | 7 | 11 | -1 | -1 | 2 | 55 | 52 | 1.8 | 100805797 | 124543777 | tier3 | 3UTR-5UTR | 19553 | NA | 0 |
| SKCM | TCGA-D3-A3C1-06A | TCGA-D3-A3C1 | VGF|SIAE | VGF | SIAE | 7 | 11 | -1 | -1 | 2 | 206 | 194 | 1.8 | 100805797 | 124543777 | tier3 | 3UTR-5UTR | 19554 | NA | 0 |
| LUSC | TCGA-NC-A5HT-01A | TCGA-NC-A5HT | SMO|TSPAN33 | SMO | TSPAN33 | 7 | 7 | 1 | 1 | 7 | 4 | 2 | 0.25 | 128829323 | 128801520 | tier1 | Out-of-frame | 16428 | NA | 0 |
| LUAD | TCGA-05-4420-01A | TCGA-05-4420 | HAT1|EXOC6B | HAT1 | EXOC6B | 2 | 2 | 1 | -1 | 8 | 14 | 10 | 0.34 | 172844276 | 72411316 | tier1 | In-frame | 7592 | non-validated | 0.35402 |
| HNSC | TCGA-CR-5243-01A | TCGA-CR-5243 | EIF2AK4|ANKRD34C | EIF2AK4 | ANKRD34C | 15 | 15 | 1 | 1 | 17 | 10 | 10 | 1.1 | 40241469 | 79585583 | tier1 | CDS-5UTR | 5426 | NA | 0.36043 |
| LUAD | TCGA-93-A4JQ-01A | TCGA-93-A4JQ | EIF2AK4|AVEN | EIF2AK4 | AVEN | 15 | 15 | 1 | -1 | 2 | 1 | 1 | 1.1 | 40294989 | 34160056 | tier3 | Out-of-frame | 5427 | NA | 0.36236 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | TTBK2|TGM7 | TTBK2 | TGM7 | 15 | 15 | -1 | -1 | 3 | 2 | 2 | 1.6 | 43212636 | 43585829 | tier1 | 5UTR-CDS | 18824 | NA | 0 |
| LUSC | TCGA-56-7822-01A | TCGA-56-7822 | TTBK2|UBR1 | TTBK2 | UBR1 | 15 | 15 | -1 | -1 | 4 | 5 | 5 | 0.45 | 43075617 | 43309379 | tier1 | In-frame | 18825 | NA | 0 |
| BRCA | TCGA-BH-A1ES-06A | TCGA-BH-A1ES | PLD2|ZZEF1 | PLD2 | ZZEF1 | 17 | 17 | 1 | -1 | 3 | 2 | 2 | 0.12 | 4712846 | 4009103 | tier1 | In-frame | 12980 | NA | 0.38028 |
| SARC | TCGA-DX-A8BM-01A | TCGA-DX-A8BM | ATP1B2|SLC37A3 | ATP1B2 | SLC37A3 | 17 | 7 | 1 | -1 | 7 | 5 | 5 | 4.8 | 7554948 | 140037149 | tier1 | Out-of-frame | 1701 | NA | 0.34724 |
| TGCT | TCGA-YU-AA61-01A | TCGA-YU-AA61 | FXR2|TP53 | FXR2 | TP53 | 17 | 17 | -1 | -1 | 23 | 11 | 11 | 0.98 | 7504727 | 7577608 | tier1 | In-frame | 6844 | NA | 0.38466 |
| PRAD | TCGA-KC-A7FD-01A | TCGA-KC-A7FD | FXR2|TARBP1 | FXR2 | TARBP1 | 17 | 1 | -1 | -1 | 7 | 7 | 7 | 6.6 | 7508963 | 234566047 | tier1 | In-frame | 6843 | NA | 0.36165 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | FXR2|CAB39L | FXR2 | CAB39L | 17 | 13 | -1 | -1 | 34 | 7 | 7 | 0.39 | 7506227 | 49957077 | tier1 | CDS-5UTR | 6842 | NA | 0.36452 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | CCNT1|ADCY6 | CCNT1 | ADCY6 | 12 | 12 | -1 | -1 | 3 | 1 | 1 | 1.6 | 49094796 | 49177221 | tier3 | CDS-5UTR | 3228 | NA | 0.37513 |
| LIHC | TCGA-DD-A73G-01A | TCGA-DD-A73G | CCNT1|RP11-579D7.1 | CCNT1 | RP11-579D7.1 | 12 | 12 | -1 | 1 | 5 | 9 | 9 | 1.7 | 49108226 | 49152992 | tier1 | Out-of-frame | 3229 | NA | 0.36781 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | SLC44A2|PTPRQ | SLC44A2 | PTPRQ | 19 | 12 | 1 | 1 | 8 | 8 | 8 | 3.1 | 10713237 | 80981908 | tier1 | In-frame | 16231 | NA | 0 |
| PRAD | TCGA-ZG-A9L4-01A | TCGA-ZG-A9L4 | ITFG1|SLC45A2 | ITFG1 | SLC45A2 | 16 | 5 | -1 | -1 | 7 | 8 | 8 | 1.1 | 47345151 | 33964121 | tier1 | Out-of-frame | 8368 | NA | 0.3407 |
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