TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-A7-A13E-01A	TCGA-A7-A13E	KDM4B\|C19orf44	KDM4B	C19orf44	19	19	1	1	31	8	8	0.19	5016350	16611603	tier1	5UTR-5UTR	8669	NA	0
LGG	TCGA-DU-8163-01A	TCGA-DU-8163	KDM4B\|CHAF1A	KDM4B	CHAF1A	19	19	1	1	12	4	4	0.67	5082515	4418017	tier1	In-frame	8670	NA	0.35594
LGG	TCGA-WY-A85E-01A	TCGA-WY-A85E	KDM4B\|SBNO2	KDM4B	SBNO2	19	19	1	-1	5	2	2	0.081	5082515	1127764	tier1	In-frame	8675	NA	0.32687
LUAD	TCGA-49-4486-01A	TCGA-49-4486	KDM4B\|AKAP8L	KDM4B	AKAP8L	19	19	1	-1	95	59	51	0.003	5144913	15491423	tier4	In-frame	8667	validated	0.36257
OV	TCGA-10-0926-01A	TCGA-10-0926	KDM4B\|MPND	KDM4B	MPND	19	19	1	1	6	6	5	1.1	5082515	4345742	tier1	In-frame	8673	NA	0.34497
PCPG	TCGA-WB-A80M-01A	TCGA-WB-A80M	KDM4B\|PHYHIPL	KDM4B	PHYHIPL	19	10	1	1	104	74	70	2.5	5082515	61004817	tier1	Out-of-frame	8674	NA	0.3439
PRAD	TCGA-HC-8265-01A	TCGA-HC-8265	KDM4B\|AC011498.1	KDM4B	AC011498.1	19	19	1	1	9	5	2	0.13	5077481	4493700	tier4	In-frame	8666	NA	0
PRAD	TCGA-G9-A9S7-01A	TCGA-G9-A9S7	KDM4B\|ASTN2	KDM4B	ASTN2	19	9	1	-1	2	25	24	0.27	4969241	119382722	tier3	5UTR-CDS	8668	NA	0.33284
SKCM	TCGA-D3-A2JE-06A	TCGA-D3-A2JE	KDM4B\|FOXA3	KDM4B	FOXA3	19	19	1	1	4	2	2	1.4	5144913	46375333	tier1	In-frame	8672	NA	0.34187
UCS	TCGA-N9-A4Q1-01A	TCGA-N9-A4Q1	KDM4B\|UVRAG	KDM4B	UVRAG	19	11	1	1	9	5	4	0.82	5016350	75851755	tier1	5UTR-CDS	8679	NA	0.33918
SKCM	TCGA-EB-A82B-01A	TCGA-EB-A82B	PTPN12\|BAI1	PTPN12	BAI1	7	8	1	1	12	11	9	0.76	77266365	143599499	tier1	Out-of-frame	13818	NA	0.37714
BLCA	TCGA-4Z-AA87-01A	TCGA-4Z-AA87	PTPN12\|AC007000.1	PTPN12	AC007000.1	7	7	1	1	210	161	153	0.4	77166962	76903011	tier1	In-frame	13813	NA	0.36628
BRCA	TCGA-AN-A0FJ-01A	TCGA-AN-A0FJ	PTPN12\|AC007000.1	PTPN12	AC007000.1	7	7	1	1	4	14	14	0.4	77200503	76796975	tier1	CDS-5UTR	13814	NA	0.36628
ESCA	TCGA-LN-A49U-01A	TCGA-LN-A49U	PTPN12\|PION	PTPN12	PION	7	7	1	-1	5	11	5	0.11	77221573	77035422	tier1	Out-of-frame	13820	NA	0.37061
ESCA	TCGA-LN-A49L-01A	TCGA-LN-A49L	PTPN12\|RHBDD2	PTPN12	RHBDD2	7	7	1	1	21	112	105	100	77166962	75510683	tier1	CDS-5UTR	13821	validated	0.3704
LGG	TCGA-DU-5855-01A	TCGA-DU-5855	PTPN12\|DYNC1I1	PTPN12	DYNC1I1	7	7	1	1	175	240	227	1.2	77166962	95705369	tier1	In-frame	13819	NA	0.37354
SARC	TCGA-K1-A6RT-01A	TCGA-K1-A6RT	PTPN12\|AC027763.2	PTPN12	AC027763.2	7	17	1	-1	3	2	2	1.2	77212967	6913208	tier1	In-frame	13817	NA	0.36628
SKCM	TCGA-ER-A19T-01A	TCGA-ER-A19T	PTPN12\|AC007000.1	PTPN12	AC007000.1	7	7	1	1	24	23	22	0.4	77166962	76908069	tier1	In-frame	13815	non-validated	0.36628
STAD	TCGA-HU-A4GH-01A	TCGA-HU-A4GH	PTPN12\|AC007000.1	PTPN12	AC007000.1	7	7	1	1	2	26	25	0.4	77230123	76922269	tier2	Out-of-frame	13816	NA	0.36628
ESCA	TCGA-LN-A49U-01A	TCGA-LN-A49U	POR\|RHBDD2	POR	RHBDD2	7	7	1	1	3	20	18	2.1	75544497	75510683	tier1	5UTR-5UTR	13190	NA	0.34933

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