TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
CESC	TCGA-C5-A1MQ-01A	TCGA-C5-A1MQ	UBA2\|GPI	UBA2	GPI	19	19	1	1	27	26	22	0.46	34919475	34869839	tier1	In-frame	19022	non-validated	0
ESCA	TCGA-L5-A4OQ-01A	TCGA-L5-A4OQ	UBA2\|MIER2	UBA2	MIER2	19	19	1	-1	5	43	42	0.96	34941269	334542	tier1	In-frame	19023	NA	0
OV	TCGA-29-1697-01A	TCGA-29-1697	UBA2\|PDCD2L	UBA2	PDCD2L	19	19	1	1	7	56	48	1.4	34936026	34916895	tier1	Out-of-frame	19024	NA	0
STAD	TCGA-BR-8289-01A	TCGA-BR-8289	THRA\|CDK12	THRA	CDK12	17	17	1	1	2	30	26	0.41	38245586	37686884	tier2	Out-of-frame	17777	NA	0
BRCA	TCGA-BH-A0AW-01A	TCGA-BH-A0AW	THRA\|B4GALNT2	THRA	B4GALNT2	17	17	1	1	8	7	6	1.2	38233861	47236399	tier1	In-frame	17776	NA	0
BRCA	TCGA-D8-A1XJ-01A	TCGA-D8-A1XJ	THRA\|TADA2A	THRA	TADA2A	17	17	1	1	14	16	16	0.11	38219345	35771356	tier1	5UTR-5UTR	17782	NA	0
GBM	TCGA-16-1045-01B	TCGA-16-1045	THRA\|GSDMA	THRA	GSDMA	17	17	1	1	24	94	74	0.11	38233861	38121936	tier1	CDS-5UTR	17778	NA	0
LUAD	TCGA-95-7043-01A	TCGA-95-7043	THRA\|PSMD3	THRA	PSMD3	17	17	1	1	4	10	9	0.009	38245586	38140547	tier2	Out-of-frame	17781	NA	0
LUSC	TCGA-85-8479-01A	TCGA-85-8479	THRA\|PSMD3	THRA	PSMD3	17	17	1	1	31	19	18	0.009	38241068	38142828	tier1	In-frame	17780	NA	0
UCS	TCGA-N5-A4RT-01A	TCGA-N5-A4RT	THRA\|KRT20	THRA	KRT20	17	17	1	-1	340	169	154	0.54	38245586	39033669	tier1	Out-of-frame	17779	NA	0
LAML	TCGA-AB-2857-03A	TCGA-AB-2857	PRMT1\|TLE6	PRMT1	TLE6	19	19	1	1	6	3	3	1.5	50180573	2978196	tier1	CDS-5UTR	13582	NA	0.35914
LUAD	TCGA-J2-A4AD-01A	TCGA-J2-A4AD	STAT5A\|ARNTL2	STAT5A	ARNTL2	17	12	1	1	2	1	1	0.06	40447811	27538414	tier4	In-frame	17017	NA	0
LUSC	TCGA-43-8115-01A	TCGA-43-8115	TRAP1\|CREBBP	TRAP1	CREBBP	16	16	-1	-1	3	2	2	0.25	3740828	3799684	tier1	Out-of-frame	18564	NA	0
BRCA	TCGA-E2-A14R-01A	TCGA-E2-A14R	PZP\|CPNE4	PZP	CPNE4	12	3	-1	-1	4	1	1	0.073	9333579	131442469	tier2	In-frame	14000	NA	0
BRCA	TCGA-AQ-A0Y5-01A	TCGA-AQ-A0Y5	MAP2K2\|CAMKK1	MAP2K2	CAMKK1	19	17	-1	-1	7	7	4	0.22	4110507	3789024	tier1	Out-of-frame	9833	NA	0.38304
HNSC	TCGA-BA-A4IG-01A	TCGA-BA-A4IG	MAP2K2\|PSMD9	MAP2K2	PSMD9	19	12	-1	1	212	22	21	0.054	4110507	122353762	tier4	In-frame	9834	NA	0.38322
HNSC	TCGA-BA-A4IG-01A	TCGA-BA-A4IG	MAP2K2\|RP11-87C12.2	MAP2K2	RP11-87C12.2	19	12	-1	1	191	39	36	0.031	4110507	122353762	tier4	In-frame	9835	NA	0.38158
LUSC	TCGA-60-2711-01A	TCGA-60-2711	ATP13A4\|NAALADL2	ATP13A4	NAALADL2	3	3	-1	1	3	1	1	0.005	193272529	174814580	tier3	Out-of-frame	1688	non-validated	0.34271
SARC	TCGA-DX-A3U6-01A	TCGA-DX-A3U6	DYRK2\|CNTN2	DYRK2	CNTN2	12	1	1	1	28	9	8	2.6	68043725	205022228	tier1	CDS-5UTR	5237	validated	0.38072
ACC	TCGA-OR-A5KV-01A	TCGA-OR-A5KV	PIN1\|PPP2R3C	PIN1	PPP2R3C	19	14	1	-1	2	2	1	0.38	9960365	35585943	tier3	3UTR-CDS	12858	NA	0.36085

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