Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-5M-AAT4-01A | TCGA-5M-AAT4 | RBCK1|CLCN7 | RBCK1 | CLCN7 | 20 | 16 | 1 | -1 | 2 | 3 | 1 | 0.43 | 400375 | 1509188 | tier3 | Out-of-frame | 14420 | NA | 0 |
| BRCA | TCGA-EW-A1PF-01A | TCGA-EW-A1PF | STK35|CHD6 | STK35 | CHD6 | 20 | 20 | 1 | -1 | 8 | 4 | 4 | 0.74 | 2084011 | 40113247 | tier1 | Out-of-frame | 17080 | NA | 0 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | STK35|GP5 | STK35 | GP5 | 20 | 3 | 1 | -1 | 7 | 2 | 2 | 0.84 | 2098061 | 194119013 | tier1 | 3UTR-5UTR | 17081 | NA | 0 |
| LGG | TCGA-DU-8163-01A | TCGA-DU-8163 | BMP2|TRIB3 | BMP2 | TRIB3 | 20 | 20 | 1 | 1 | 2 | 1 | 1 | 0.026 | 6749522 | 368655 | tier3 | 5UTR-CDS | 2124 | NA | 0.38588 |
| BRCA | TCGA-E2-A14V-01A | TCGA-E2-A14V | BPIFB1|SNAPC5 | BPIFB1 | SNAPC5 | 20 | 15 | 1 | -1 | 3 | 3 | 3 | 100 | 31879794 | 66787757 | tier1 | In-frame | 2156 | NA | 0.35115 |
| HNSC | TCGA-KU-A66T-01A | TCGA-KU-A66T | KDM5C|HUWE1 | KDM5C | HUWE1 | X | X | -1 | -1 | 144 | 82 | 75 | 0.26 | 53245256 | 53707139 | tier1 | CDS-5UTR | 8700 | NA | 0.36836 |
| LGG | TCGA-VV-A86M-01A | TCGA-VV-A86M | KDM5C|MAGT1 | KDM5C | MAGT1 | X | X | -1 | -1 | 3 | 3 | 2 | 0.25 | 53222619 | 77086392 | tier1 | Out-of-frame | 8701 | NA | 0.32936 |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | KDM5C|PPP4R1 | KDM5C | PPP4R1 | X | 18 | -1 | -1 | 6 | 3 | 3 | 0.85 | 53240679 | 9550396 | tier1 | Out-of-frame | 8702 | non-validated | 0.35484 |
| LIHC | TCGA-BC-A112-01A | TCGA-BC-A112 | PSMB2|FAM116B | PSMB2 | FAM116B | 1 | 22 | -1 | -1 | 38 | 34 | 29 | 0.67 | 36096875 | 50750846 | tier1 | In-frame | 13713 | NA | 0.35697 |
| UCEC | TCGA-BK-A139-02A | TCGA-BK-A139 | ST3GAL3|TIE1 | ST3GAL3 | TIE1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 0.34 | 44303983 | 43770522 | tier2 | Out-of-frame | 16938 | NA | 0 |
| BRCA | TCGA-PL-A8LZ-01A | TCGA-PL-A8LZ | ST3GAL3|KDM4A | ST3GAL3 | KDM4A | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1.4 | 44173364 | 44169288 | tier3 | 5UTR-CDS | 16934 | NA | 0 |
| LIHC | TCGA-LG-A6GG-01A | TCGA-LG-A6GG | ST3GAL3|TGFBR3 | ST3GAL3 | TGFBR3 | 1 | 1 | 1 | -1 | 15 | 1 | 1 | 2 | 44257820 | 92195530 | tier2 | In-frame | 16937 | NA | 0 |
| ESCA | TCGA-LN-A7HV-01A | TCGA-LN-A7HV | ST3GAL3|PTPRF | ST3GAL3 | PTPRF | 1 | 1 | 1 | 1 | 3 | 32 | 28 | 2.4 | 44280605 | 44069087 | tier1 | Out-of-frame | 16935 | NA | 0 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | ST3GAL3|ZMAT4 | ST3GAL3 | ZMAT4 | 1 | 8 | 1 | -1 | 26 | 23 | 21 | 0.21 | 44202051 | 40389757 | tier1 | Out-of-frame | 16939 | NA | 0 |
| BRCA | TCGA-BH-A1FC-01A | TCGA-BH-A1FC | ST3GAL3|TAL1 | ST3GAL3 | TAL1 | 1 | 1 | 1 | -1 | 10 | 6 | 6 | 1.5 | 44303983 | 47685846 | tier1 | Out-of-frame | 16936 | validated | 0 |
| PCPG | TCGA-WB-A81P-01A | TCGA-WB-A81P | ST3GAL3|GLCCI1 | ST3GAL3 | GLCCI1 | 1 | 7 | 1 | 1 | 17 | 11 | 10 | 5 | 44202051 | 8124527 | tier1 | In-frame | 16933 | NA | 0 |
| PRAD | TCGA-EJ-5506-01A | TCGA-EJ-5506 | CAPNS1|MTA2 | CAPNS1 | MTA2 | 19 | 11 | 1 | -1 | 2 | 13 | 6 | 0.004 | 36641254 | 62363809 | tier3 | 3UTR-CDS | 2970 | NA | 0.37836 |
| LUAD | TCGA-55-6978-01A | TCGA-55-6978 | CAPNS1|CHD1 | CAPNS1 | CHD1 | 19 | 5 | 1 | -1 | 2 | 24 | 18 | 1.1 | 36641254 | 98219587 | tier4 | NA | 2969 | NA | 0.37045 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | CAPNS1|ARHGEF26 | CAPNS1 | ARHGEF26 | 19 | 3 | 1 | 1 | 2 | 2 | 1 | 0.27 | 36641254 | 153842199 | tier3 | 3UTR-CDS | 2967 | NA | 0.35684 |
| PRAD | TCGA-H9-A6BY-01A | TCGA-H9-A6BY | CAPNS1|CCDC149 | CAPNS1 | CCDC149 | 19 | 4 | 1 | -1 | 2 | 1 | 1 | 0.29 | 36641254 | 24981770 | tier3 | 3UTR-5UTR | 2968 | NA | 0.36393 |
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