Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | ABCC4|PTPN4 | ABCC4 | PTPN4 | 13 | 2 | -1 | 1 | 7 | 5 | 4 | 0.18 | 95953495 | 120690000 | tier1 | In-frame | 66 | validated | 0.37078 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | ABCC4|COL4A2 | ABCC4 | COL4A2 | 13 | 13 | -1 | 1 | 31 | 25 | 23 | 1.3 | 95822786 | 111077081 | tier1 | In-frame | 65 | NA | 0.36578 |
| BLCA | TCGA-4Z-AA7R-01A | TCGA-4Z-AA7R | ABCC4|UGGT2 | ABCC4 | UGGT2 | 13 | 13 | -1 | -1 | 16 | 9 | 9 | 3.5 | 95813443 | 96454066 | tier1 | In-frame | 67 | NA | 0.35055 |
| PRAD | TCGA-VP-A876-01A | TCGA-VP-A876 | ABCC4|CCDC169 | ABCC4 | CCDC169 | 13 | 13 | -1 | -1 | 4 | 5 | 4 | 0.22 | 95838955 | 36801518 | tier1 | Out-of-frame | 64 | NA | 0.35055 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | ABCC4|UGGT2 | ABCC4 | UGGT2 | 13 | 13 | -1 | -1 | 15 | 2 | 2 | 3.5 | 95953495 | 96489456 | tier1 | Out-of-frame | 68 | NA | 0.35055 |
| BRCA | TCGA-AR-A254-01A | TCGA-AR-A254 | OPRL1|PRPF6 | OPRL1 | PRPF6 | 20 | 20 | 1 | 1 | 56 | 38 | 25 | 0.03 | 62711705 | 62641553 | tier1 | 5UTR-CDS | 12041 | NA | 0.37351 |
| PRAD | TCGA-G9-6342-01A | TCGA-G9-6342 | ATG4C|LEPR | ATG4C | LEPR | 1 | 1 | 1 | 1 | 8 | 8 | 8 | 0.071 | 63307218 | 66098835 | tier1 | In-frame | 1627 | NA | 0.37248 |
| LGG | TCGA-DU-7010-01A | TCGA-DU-7010 | ATG4C|INADL | ATG4C | INADL | 1 | 1 | 1 | 1 | 13 | 6 | 6 | 0.074 | 63249944 | 62545122 | tier1 | 5UTR-CDS | 1626 | NA | 0.37462 |
| OV | TCGA-20-1684-01A | TCGA-20-1684 | ATG4C|NFIA | ATG4C | NFIA | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.99 | 63270926 | 61798184 | tier2 | In-frame | 1628 | NA | 0.36078 |
| PRAD | TCGA-KC-A7FA-01A | TCGA-KC-A7FA | ATG4C|C18orf42 | ATG4C | C18orf42 | 1 | 18 | 1 | -1 | 2 | 2 | 2 | 0.24 | 63249896 | 5145754 | tier2 | 5UTR-CDS | 1625 | NA | 0 |
| CESC | TCGA-Q1-A5R1-01A | TCGA-Q1-A5R1 | C3|SUPT16H | C3 | SUPT16H | 19 | 14 | -1 | -1 | 2 | 12 | 9 | 0.006 | 6677846 | 21829491 | tier4 | 3UTR-CDS | 2701 | NA | 0.37978 |
| ESCA | TCGA-JY-A938-01A | TCGA-JY-A938 | C3|ZNF556 | C3 | ZNF556 | 19 | 19 | -1 | 1 | 3 | 24 | 22 | 0.3 | 6690640 | 2873494 | tier1 | In-frame | 2702 | NA | 0.37374 |
| LGG | TCGA-DH-5142-01A | TCGA-DH-5142 | C3|RABEP1 | C3 | RABEP1 | 19 | 17 | -1 | 1 | 2 | 14 | 8 | 0.99 | 6677846 | 5283828 | tier4 | NA | 2699 | NA | 0.37185 |
| LIHC | TCGA-DD-A4NR-01A | TCGA-DD-A4NR | C3|ABCF1 | C3 | ABCF1 | 19 | 6 | -1 | 1 | 2 | 2 | 2 | 0.64 | 6677846 | 30545853 | tier3 | 3UTR-CDS | 2695 | NA | 0.37332 |
| LIHC | TCGA-DD-AACA-02A | TCGA-DD-AACA | C3|DDX21 | C3 | DDX21 | 19 | 10 | -1 | 1 | 2 | 11 | 8 | 3 | 6677846 | 70723858 | tier3 | NA | 2696 | NA | 0.37518 |
| LIHC | TCGA-DD-A1EC-01A | TCGA-DD-A1EC | C3|MFN1 | C3 | MFN1 | 19 | 3 | -1 | 1 | 2 | 7 | 7 | 0.006 | 6677846 | 179096011 | tier4 | NA | 2698 | NA | 0.36609 |
| THCA | TCGA-EL-A3D1-01A | TCGA-EL-A3D1 | C3|ELK3 | C3 | ELK3 | 19 | 12 | -1 | 1 | 2 | 30 | 19 | 0.77 | 6677846 | 96588323 | tier3 | 3UTR-5UTR | 2697 | NA | 0.37731 |
| UCS | TCGA-N8-A4PP-01A | TCGA-N8-A4PP | C3|SEC63 | C3 | SEC63 | 19 | 6 | -1 | -1 | 2 | 6 | 5 | 1.2 | 6677846 | 108214782 | tier4 | NA | 2700 | NA | 0.36839 |
| HNSC | TCGA-CN-5369-01A | TCGA-CN-5369 | TNFSF14|GRAMD1A | TNFSF14 | GRAMD1A | 19 | 19 | -1 | 1 | 5 | 3 | 3 | 0.024 | 6667124 | 35510095 | tier1 | In-frame | 18345 | NA | 0 |
| LIHC | TCGA-RC-A7SK-01A | TCGA-RC-A7SK | RBCK1|TRIB3 | RBCK1 | TRIB3 | 20 | 20 | 1 | 1 | 3 | 6 | 6 | 0.07 | 398574 | 368655 | tier1 | In-frame | 14421 | NA | 0 |
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