Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-UL-AAZ6-01A | TCGA-UL-AAZ6 | CHST8|ZNF146 | CHST8 | ZNF146 | 19 | 19 | 1 | 1 | 2 | 2 | 2 | 1.2 | 34113202 | 36719650 | tier2 | 5UTR-5UTR | 3717 | NA | 0.35076 |
| CESC | TCGA-EK-A2RJ-01A | TCGA-EK-A2RJ | CHST8|C19orf24 | CHST8 | C19orf24 | 19 | 19 | 1 | 1 | 18 | 11 | 11 | 0.084 | 34180297 | 1278776 | tier1 | Out-of-frame | 3714 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | CHST8|PDCD5 | CHST8 | PDCD5 | 19 | 19 | 1 | 1 | 3 | 5 | 5 | 0.29 | 34113202 | 33073101 | tier1 | 5UTR-CDS | 3716 | NA | 0.36077 |
| KIRC | TCGA-CW-5581-01A | TCGA-CW-5581 | ATP8A1|LDB2 | ATP8A1 | LDB2 | 4 | 4 | -1 | -1 | 6 | 5 | 5 | 0.063 | 42658842 | 16760883 | tier1 | Out-of-frame | 1766 | NA | 0.35145 |
| OV | TCGA-25-1324-01A | TCGA-25-1324 | ATP8A1|CRMP1 | ATP8A1 | CRMP1 | 4 | 4 | -1 | -1 | 14 | 114 | 105 | 0.93 | 42626553 | 5844888 | tier1 | In-frame | 1765 | NA | 0.36614 |
| STAD | TCGA-CD-8536-01A | TCGA-CD-8536 | ATP8A1|PDS5A | ATP8A1 | PDS5A | 4 | 4 | -1 | -1 | 7 | 21 | 18 | 0.05 | 42551030 | 39865079 | tier1 | In-frame | 1767 | NA | 0.35271 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | USP9X|MAPKAPK5 | USP9X | MAPKAPK5 | X | 12 | 1 | 1 | 2 | 2 | 2 | 0.23 | 40982977 | 112303054 | tier3 | In-frame | 19442 | NA | 0 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | USP9X|CD244 | USP9X | CD244 | X | 1 | 1 | -1 | 7 | 3 | 3 | 0.063 | 40945362 | 160808839 | tier1 | 5UTR-CDS | 19439 | NA | 0 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | USP9X|KDM6A | USP9X | KDM6A | X | X | 1 | 1 | 17 | 25 | 24 | 0.012 | 41031211 | 44870206 | tier1 | Out-of-frame | 19440 | NA | 0 |
| LIHC | TCGA-FV-A496-01A | TCGA-FV-A496 | USP9X|ATP6AP2 | USP9X | ATP6AP2 | X | X | 1 | 1 | 50 | 18 | 16 | 0.65 | 41031211 | 40464813 | tier1 | Out-of-frame | 19437 | validated | 0 |
| HNSC | TCGA-T2-A6WZ-01A | TCGA-T2-A6WZ | USP9X|BLVRB | USP9X | BLVRB | X | 19 | 1 | -1 | 71 | 58 | 51 | 0.92 | 41078484 | 40964452 | tier1 | In-frame | 19438 | NA | 0 |
| HNSC | TCGA-CV-6953-01A | TCGA-CV-6953 | USP9X|MRPS31 | USP9X | MRPS31 | X | 13 | 1 | -1 | 32 | 10 | 10 | 1.4 | 41022130 | 41303737 | tier1 | Out-of-frame | 19443 | NA | 0 |
| KIRC | TCGA-BP-4349-01A | TCGA-BP-4349 | USP9X|MAGEB18 | USP9X | MAGEB18 | X | X | 1 | 1 | 2 | 1 | 1 | 2 | 40945362 | 26158297 | tier3 | 5UTR-3UTR | 19441 | NA | 0 |
| LIHC | TCGA-G3-A25Z-01A | TCGA-G3-A25Z | USP9X|ZNF692 | USP9X | ZNF692 | X | 1 | 1 | -1 | 2 | 1 | 1 | 0.053 | 40945362 | 249152520 | tier2 | 5UTR-5UTR | 19445 | NA | 0 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | USP9X|RBBP7 | USP9X | RBBP7 | X | X | 1 | -1 | 61 | 65 | 60 | 0.06 | 40945362 | 16881223 | tier1 | 5UTR-CDS | 19444 | NA | 0 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | SIRT5|PHACTR1 | SIRT5 | PHACTR1 | 6 | 6 | 1 | 1 | 2 | 2 | 1 | 0.4 | 13601181 | 13273092 | tier4 | In-frame | 15960 | NA | 0 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | ABCC10|PPP2R5D | ABCC10 | PPP2R5D | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.55 | 43401098 | 42974201 | tier3 | In-frame | 56 | NA | 0.36693 |
| LUSC | TCGA-52-7810-01A | TCGA-52-7810 | COL21A1|DST | COL21A1 | DST | 6 | 6 | -1 | -1 | 10 | 1 | 1 | 0.089 | 56032922 | 56382418 | tier2 | In-frame | 4004 | NA | 0.37076 |
| HNSC | TCGA-CR-7383-01A | TCGA-CR-7383 | COL21A1|EFCAB1 | COL21A1 | EFCAB1 | 6 | 8 | -1 | -1 | 2 | 1 | 1 | 0.35 | 56112185 | 49643203 | tier4 | 5UTR-CDS | 4005 | NA | 0.34995 |
| PRAD | TCGA-HC-A6AP-01A | TCGA-HC-A6AP | GLO1|KIF6 | GLO1 | KIF6 | 6 | 6 | -1 | -1 | 2 | 5 | 4 | 0.64 | 38670747 | 39387779 | tier3 | Out-of-frame | 7116 | NA | 0.35135 |
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