Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 132 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | CHD6|PTPRT | CHD6 | PTPRT | 20 | 20 | -1 | -1 | 4 | 51 | 48 | 0.41 | 40246979 | 40877462 | tier1 | 5UTR-CDS | 3632 | NA | 0.36291 |
| BRCA | TCGA-EW-A1PF-01A | TCGA-EW-A1PF | CHD6|CCDC90A | CHD6 | CCDC90A | 20 | 6 | -1 | -1 | 3 | 11 | 11 | 0.47 | 40246979 | 13807276 | tier1 | 5UTR-CDS | 3625 | NA | 0.36031 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | CHD6|EFCAB11 | CHD6 | EFCAB11 | 20 | 14 | -1 | -1 | 8 | 4 | 3 | 0.098 | 40161689 | 90263668 | tier1 | In-frame | 3629 | non-validated | 0.35681 |
| BRCA | TCGA-E2-A106-01A | TCGA-E2-A106 | CHD6|TSHZ2 | CHD6 | TSHZ2 | 20 | 20 | -1 | 1 | 7 | 2 | 2 | 0.071 | 40074305 | 52103683 | tier4 | CDS-3UTR | 3634 | NA | 0.36345 |
| CESC | TCGA-C5-A7CO-01A | TCGA-C5-A7CO | CHD6|CTNNBL1 | CHD6 | CTNNBL1 | 20 | 20 | -1 | 1 | 15 | 9 | 8 | 0.062 | 40141485 | 36488301 | tier1 | In-frame | 3627 | NA | 0.36294 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | CHD6|C20orf152 | CHD6 | C20orf152 | 20 | 20 | -1 | 1 | 6 | 11 | 11 | 0.75 | 40246979 | 34560551 | tier1 | 5UTR-CDS | 3624 | NA | 0 |
| SARC | TCGA-DX-AB2Q-01A | TCGA-DX-AB2Q | CHD6|MYH7B | CHD6 | MYH7B | 20 | 20 | -1 | 1 | 4 | 4 | 1 | 0.057 | 40068640 | 33583139 | tier2 | Out-of-frame | 3631 | NA | 0.36029 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | CHD6|DHX58 | CHD6 | DHX58 | 20 | 17 | -1 | -1 | 8 | 8 | 7 | 0.083 | 40043826 | 40253964 | tier1 | In-frame | 3628 | NA | 0.36174 |
| THYM | TCGA-ZB-A969-01A | TCGA-ZB-A969 | CHD6|SPEN | CHD6 | SPEN | 20 | 1 | -1 | 1 | 2 | 3 | 3 | 0.032 | 40246979 | 16199311 | tier2 | 5UTR-CDS | 3633 | NA | 0.37764 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | PLCG1|BPIFB1 | PLCG1 | BPIFB1 | 20 | 20 | 1 | 1 | 20 | 10 | 10 | 1.2 | 39766498 | 31873839 | tier1 | CDS-5UTR | 12968 | NA | 0.38448 |
| BRCA | TCGA-EW-A2FW-01A | TCGA-EW-A2FW | PLCG1|TAF4 | PLCG1 | TAF4 | 20 | 20 | 1 | -1 | 8 | 7 | 7 | 0.26 | 39766498 | 60584230 | tier1 | Out-of-frame | 12970 | NA | 0.39009 |
| STAD | TCGA-VQ-A8PH-01A | TCGA-VQ-A8PH | PLCG1|EYA2 | PLCG1 | EYA2 | 20 | 20 | 1 | 1 | 4 | 62 | 56 | 0.53 | 39798909 | 45797787 | tier1 | In-frame | 12969 | NA | 0.3892 |
| SKCM | TCGA-EE-A3AD-06A | TCGA-EE-A3AD | PTGIS|IFT52 | PTGIS | IFT52 | 20 | 20 | -1 | 1 | 30 | 28 | 26 | 0.12 | 48156107 | 42232823 | tier1 | In-frame | 13771 | NA | 0.34485 |
| PRAD | TCGA-HC-8260-01A | TCGA-HC-8260 | MTRR|SLC30A5 | MTRR | SLC30A5 | 5 | 5 | 1 | 1 | 2 | 2 | 2 | 0.51 | 7878435 | 68413066 | tier4 | In-frame | 10839 | NA | 0.34498 |
| LUSC | TCGA-66-2753-01A | TCGA-66-2753 | MTRR|NMD3 | MTRR | NMD3 | 5 | 3 | 1 | 1 | 29 | 13 | 12 | 1.2 | 7897360 | 160965046 | tier1 | In-frame | 10838 | NA | 0.35241 |
| SKCM | TCGA-EB-A44R-06A | TCGA-EB-A44R | MTRR|FASTKD3 | MTRR | FASTKD3 | 5 | 5 | 1 | -1 | 83 | 45 | 41 | 0.28 | 7897360 | 7866096 | tier1 | Out-of-frame | 10837 | NA | 0.34439 |
| HNSC | TCGA-CN-5369-01A | TCGA-CN-5369 | PEPD|AC011497.1 | PEPD | AC011497.1 | 19 | 19 | -1 | 1 | 6 | 4 | 4 | 1.3 | 33953901 | 43029770 | tier1 | CDS-3UTR | 12610 | NA | 0.34471 |
| LUAD | TCGA-69-A59K-01A | TCGA-69-A59K | PEPD|SKAP1 | PEPD | SKAP1 | 19 | 17 | -1 | -1 | 17 | 20 | 13 | 0.11 | 33953901 | 46214699 | tier1 | Out-of-frame | 12612 | NA | 0.37843 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | PEPD|GRAMD1A | PEPD | GRAMD1A | 19 | 19 | -1 | 1 | 20 | 15 | 15 | 0.7 | 33953901 | 35500023 | tier1 | In-frame | 12611 | NA | 0.34904 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | CHST8|KCNJ15 | CHST8 | KCNJ15 | 19 | 21 | 1 | 1 | 5 | 5 | 5 | 3.1 | 34180297 | 39668848 | tier1 | CDS-5UTR | 3715 | NA | 0.3528 |
|
Showing page 132 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.