Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-HU-A4HD-01A | TCGA-HU-A4HD | SDC4|TP53TG5 | SDC4 | TP53TG5 | 20 | 20 | -1 | -1 | 16 | 192 | 170 | 1.2 | 43976965 | 44006253 | tier1 | In-frame | 15471 | NA | 0 |
| LUAD | TCGA-75-5146-01A | TCGA-75-5146 | NCOA3|SGK2 | NCOA3 | SGK2 | 20 | 20 | 1 | 1 | 52 | 31 | 25 | 2.2 | 46212005 | 42195113 | tier1 | 5UTR-5UTR | 11205 | NA | 0.37689 |
| LUSC | TCGA-6A-AB49-01A | TCGA-6A-AB49 | NCOA3|GGT7 | NCOA3 | GGT7 | 20 | 20 | 1 | -1 | 10 | 3 | 2 | 2.6 | 46130763 | 33451351 | tier1 | 5UTR-CDS | 11200 | NA | 0.37323 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | NCOA3|PADI1 | NCOA3 | PADI1 | 20 | 1 | 1 | 1 | 13 | 4 | 4 | 0.31 | 46130763 | 17548785 | tier1 | 5UTR-CDS | 11203 | NA | 0.37364 |
| BLCA | TCGA-DK-A3IS-01A | TCGA-DK-A3IS | NCOA3|DUSP15 | NCOA3 | DUSP15 | 20 | 20 | 1 | -1 | 5 | 2 | 2 | 1.7 | 46130763 | 30454956 | tier1 | 5UTR-5UTR | 11194 | NA | 0.37472 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | NCOA3|PTPRT | NCOA3 | PTPRT | 20 | 20 | 1 | -1 | 2 | 3 | 3 | 0.002 | 46130763 | 41101202 | tier3 | 5UTR-CDS | 11204 | non-validated | 0.3773 |
| UCS | TCGA-N6-A4VE-01A | TCGA-N6-A4VE | NCOA3|SULF2 | NCOA3 | SULF2 | 20 | 20 | 1 | -1 | 5 | 3 | 3 | 0.4 | 46276110 | 46331414 | tier1 | Out-of-frame | 11206 | NA | 0.37418 |
| UCEC | TCGA-PG-A915-01A | TCGA-PG-A915 | NCOA3|MLLT6 | NCOA3 | MLLT6 | 20 | 17 | 1 | 1 | 15 | 14 | 10 | 0.62 | 46130763 | 36865426 | tier1 | 5UTR-CDS | 11202 | NA | 0.3794 |
| CESC | TCGA-LP-A5U3-01A | TCGA-LP-A5U3 | NCOA3|ARHGAP26 | NCOA3 | ARHGAP26 | 20 | 5 | 1 | 1 | 45 | 31 | 31 | 0.75 | 46256767 | 142601923 | tier1 | In-frame | 11193 | NA | 0.38438 |
| LUAD | TCGA-55-7727-01A | TCGA-55-7727 | NCOA3|EYA2 | NCOA3 | EYA2 | 20 | 20 | 1 | 1 | 4 | 5 | 5 | 0.77 | 46130763 | 45618640 | tier1 | 5UTR-5UTR | 11197 | NA | 0.37842 |
| LUSC | TCGA-37-4133-01A | TCGA-37-4133 | NCOA3|EYA2 | NCOA3 | EYA2 | 20 | 20 | 1 | 1 | 6 | 2 | 2 | 0.77 | 46271128 | 45700824 | tier1 | Out-of-frame | 11196 | NA | 0.37842 |
| OV | TCGA-23-1030-01A | TCGA-23-1030 | NCOA3|EYA2 | NCOA3 | EYA2 | 20 | 20 | 1 | 1 | 6 | 3 | 3 | 0.77 | 46130763 | 45801355 | tier1 | 5UTR-CDS | 11195 | NA | 0.37842 |
| UCEC | TCGA-A5-A1OH-01A | TCGA-A5-A1OH | NCOA3|EYA2 | NCOA3 | EYA2 | 20 | 20 | 1 | 1 | 4 | 2 | 1 | 0.77 | 46212005 | 45618640 | tier4 | 5UTR-5UTR | 11198 | NA | 0.37842 |
| UCEC | TCGA-B5-A3FB-01A | TCGA-B5-A3FB | NCOA3|KCTD20 | NCOA3 | KCTD20 | 20 | 6 | 1 | 1 | 14 | 8 | 8 | 0.13 | 46130763 | 36437829 | tier1 | 5UTR-5UTR | 11201 | NA | 0.37423 |
| UCS | TCGA-N5-A4RO-01A | TCGA-N5-A4RO | NCOA3|EYA2 | NCOA3 | EYA2 | 20 | 20 | 1 | 1 | 14 | 11 | 4 | 0.77 | 46254225 | 45700824 | tier1 | Out-of-frame | 11199 | NA | 0.37842 |
| READ | TCGA-DC-6156-01A | TCGA-DC-6156 | CHD6|ATP9A | CHD6 | ATP9A | 20 | 20 | -1 | -1 | 10 | 2 | 2 | 0.074 | 40111949 | 50346517 | tier1 | In-frame | 3623 | NA | 0.36161 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | CHD6|ABHD12 | CHD6 | ABHD12 | 20 | 20 | -1 | -1 | 8 | 4 | 4 | 0.23 | 40141485 | 25304066 | tier4 | Out-of-frame | 3622 | NA | 0.36088 |
| BRCA | TCGA-C8-A8HR-01A | TCGA-C8-A8HR | CHD6|CHRNB4 | CHD6 | CHRNB4 | 20 | 15 | -1 | -1 | 2 | 2 | 2 | 0.024 | 40141485 | 78923674 | tier4 | In-frame | 3626 | NA | 0.36534 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | CHD6|FAT3 | CHD6 | FAT3 | 20 | 11 | -1 | 1 | 9 | 4 | 4 | 0.61 | 40085904 | 92613897 | tier1 | Out-of-frame | 3630 | NA | 0.36136 |
| BRCA | TCGA-AQ-A54O-01A | TCGA-AQ-A54O | CHD6|WFDC11 | CHD6 | WFDC11 | 20 | 20 | -1 | -1 | 2 | 25 | 23 | 0.85 | 40246979 | 44279290 | tier2 | 5UTR-5UTR | 3635 | NA | 0.35996 |
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