Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 130 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PAAD | TCGA-S4-A8RP-01A | TCGA-S4-A8RP | RAB9A|EGFL6 | RAB9A | EGFL6 | X | X | 1 | 1 | 26 | 15 | 14 | 0.17 | 13707407 | 13607675 | tier1 | 5UTR-CDS | 14132 | NA | 0 |
| LUSC | TCGA-63-A5MY-01A | TCGA-63-A5MY | RAB9A|TRAPPC2 | RAB9A | TRAPPC2 | X | X | 1 | -1 | 3 | 39 | 33 | 0.21 | 13722021 | 13738101 | tier1 | 5UTR-5UTR | 14133 | NA | 0 |
| SARC | TCGA-X6-A8C2-01A | TCGA-X6-A8C2 | TNFAIP6|ORC4 | TNFAIP6 | ORC4 | 2 | 2 | 1 | -1 | 13 | 11 | 10 | 0.54 | 152214274 | 148695962 | tier1 | In-frame | 18329 | NA | 0 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | BAZ2B|ITGB6 | BAZ2B | ITGB6 | 2 | 2 | -1 | -1 | 3 | 3 | 3 | 1.4 | 160229556 | 161030650 | tier1 | Out-of-frame | 1946 | NA | 0.37417 |
| CHOL | TCGA-W5-AA30-01A | TCGA-W5-AA30 | BAZ2B|PLA2R1 | BAZ2B | PLA2R1 | 2 | 2 | -1 | -1 | 4 | 1 | 1 | 0.21 | 160412334 | 160885474 | tier3 | 5UTR-CDS | 1947 | NA | 0.36728 |
| CESC | TCGA-VS-A8QH-01A | TCGA-VS-A8QH | BAZ2B|SLC38A11 | BAZ2B | SLC38A11 | 2 | 2 | -1 | -1 | 2 | 2 | 1 | 0.32 | 160241666 | 165802237 | tier4 | Out-of-frame | 1948 | NA | 0.36068 |
| STAD | TCGA-BR-A4CR-01A | TCGA-BR-A4CR | BAZ2B|STK39 | BAZ2B | STK39 | 2 | 2 | -1 | -1 | 2 | 9 | 6 | 0.093 | 160412334 | 168931741 | tier4 | 5UTR-CDS | 1949 | NA | 0.37555 |
| LUSC | TCGA-85-A4JB-01A | TCGA-85-A4JB | BAZ2B|CYBRD1 | BAZ2B | CYBRD1 | 2 | 2 | -1 | 1 | 8 | 3 | 3 | 0.11 | 160472753 | 172398095 | tier1 | 5UTR-CDS | 1945 | NA | 0.36173 |
| KIRC | TCGA-B8-4143-01A | TCGA-B8-4143 | SLC36A1|TTC37 | SLC36A1 | TTC37 | 5 | 5 | 1 | -1 | 3 | 2 | 1 | 1.2 | 150859050 | 94803693 | tier2 | Out-of-frame | 16170 | NA | 0 |
| LUAD | TCGA-49-4486-01A | TCGA-49-4486 | ADCK4|AKAP8 | ADCK4 | AKAP8 | 19 | 19 | -1 | -1 | 52 | 29 | 29 | 0.007 | 41201894 | 15469873 | tier2 | In-frame | 465 | non-validated | 0.36558 |
| LUSC | TCGA-85-7696-01A | TCGA-85-7696 | DNPEP|TNKS | DNPEP | TNKS | 2 | 8 | -1 | 1 | 33 | 19 | 16 | 0.24 | 220251008 | 9592375 | tier1 | In-frame | 5015 | NA | 0.37268 |
| ACC | TCGA-OR-A5JE-01A | TCGA-OR-A5JE | SLC12A4|DPEP2 | SLC12A4 | DPEP2 | 16 | 16 | -1 | -1 | 11 | 2 | 2 | 1.3 | 67991645 | 68033651 | tier1 | CDS-5UTR | 16011 | NA | 0 |
| HNSC | TCGA-HD-A633-01A | TCGA-HD-A633 | PI3|CLCN3 | PI3 | CLCN3 | 20 | 4 | 1 | 1 | 2 | 44 | 33 | 0.47 | 43805185 | 170623929 | tier3 | NA | 12776 | NA | 0.36464 |
| MESO | TCGA-SC-AA5Z-01A | TCGA-SC-AA5Z | SLPI|DDX27 | SLPI | DDX27 | 20 | 20 | -1 | 1 | 2 | 26 | 12 | 0.67 | 43880880 | 47849303 | tier4 | NA | 16328 | NA | 0 |
| KIRC | TCGA-B0-5691-01A | TCGA-B0-5691 | SDC4|EIF2AK2 | SDC4 | EIF2AK2 | 20 | 2 | -1 | -1 | 2 | 3 | 3 | 0.022 | 43953928 | 37342384 | tier3 | NA | 15468 | NA | 0 |
| GBM | TCGA-12-5295-01A | TCGA-12-5295 | SDC4|SPCS1 | SDC4 | SPCS1 | 20 | 3 | -1 | 1 | 55 | 168 | 141 | 1.4 | 43976965 | 52740660 | tier1 | In-frame | 15470 | NA | 0 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | SDC4|NRG1 | SDC4 | NRG1 | 20 | 8 | -1 | 1 | 2728 | 3953 | 3527 | 3.5 | 43959006 | 32585467 | tier2 | In-frame | 15469 | NA | 0 |
| LUAD | TCGA-97-8171-01A | TCGA-97-8171 | SDC4|AP1G2 | SDC4 | AP1G2 | 20 | 14 | -1 | -1 | 2 | 3 | 3 | 0.31 | 43953928 | 24037279 | tier3 | 3UTR-5UTR | 15467 | non-validated | 0 |
| LUAD | TCGA-80-5608-01A | TCGA-80-5608 | SDC4|TSHZ2 | SDC4 | TSHZ2 | 20 | 20 | -1 | 1 | 8 | 5 | 5 | 0.73 | 43976965 | 52103683 | tier1 | CDS-3UTR | 15472 | NA | 0 |
| LUAD | TCGA-97-8177-01A | TCGA-97-8177 | SDC4|YWHAB | SDC4 | YWHAB | 20 | 20 | -1 | 1 | 43 | 20 | 18 | 0.29 | 43976965 | 43532634 | tier1 | In-frame | 15473 | NA | 0 |
|
Showing page 130 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.