Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-78-8662-01A | TCGA-78-8662 | CHST3|CDH23 | CHST3 | CDH23 | 10 | 10 | 1 | 1 | 4 | 7 | 6 | 0.23 | 73724452 | 73571072 | tier1 | 5UTR-CDS | 3713 | NA | 0.35908 |
| LUSC | TCGA-66-2782-01A | TCGA-66-2782 | CISD1|GABRA1 | CISD1 | GABRA1 | 10 | 5 | 1 | 1 | 19 | 10 | 9 | 0.38 | 60029064 | 161322672 | tier1 | In-frame | 3738 | NA | 0.3659 |
| PRAD | TCGA-EJ-5532-01A | TCGA-EJ-5532 | P4HA1|NODAL | P4HA1 | NODAL | 10 | 10 | -1 | -1 | 2 | 1 | 1 | 0.6 | 74828604 | 72195739 | tier3 | In-frame | 12135 | NA | 0.34598 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | P4HA1|CCDC102A | P4HA1 | CCDC102A | 10 | 16 | -1 | -1 | 4 | 2 | 1 | 0.9 | 74833489 | 57555088 | tier2 | In-frame | 12133 | NA | 0.34528 |
| PRAD | TCGA-CH-5771-01A | TCGA-CH-5771 | P4HA1|CTNNA3 | P4HA1 | CTNNA3 | 10 | 10 | -1 | -1 | 2 | 4 | 4 | 1.2 | 74831787 | 69299427 | tier4 | In-frame | 12134 | non-validated | 0.35641 |
| UCEC | TCGA-EO-A3KW-01A | TCGA-EO-A3KW | P4HA1|TTC18 | P4HA1 | TTC18 | 10 | 10 | -1 | -1 | 8 | 5 | 3 | 0.41 | 74856524 | 75059423 | tier1 | 5UTR-CDS | 12136 | NA | 0.35042 |
| LUSC | TCGA-94-A4VJ-01A | TCGA-94-A4VJ | SLC25A16|NDUFA9 | SLC25A16 | NDUFA9 | 10 | 12 | -1 | 1 | 7 | 5 | 3 | 0.06 | 70246901 | 4791371 | tier1 | In-frame | 16094 | NA | 0 |
| SKCM | TCGA-W3-AA1V-06B | TCGA-W3-AA1V | SLC25A16|DRGX | SLC25A16 | DRGX | 10 | 10 | -1 | -1 | 18 | 18 | 16 | 0.2 | 70248224 | 50574426 | tier1 | Out-of-frame | 16093 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | CIT|LYZ | CIT | LYZ | 12 | 12 | -1 | 1 | 21 | 18 | 18 | 0.47 | 120260624 | 69743888 | tier1 | In-frame | 3741 | NA | 0.38054 |
| LUSC | TCGA-34-5232-01A | TCGA-34-5232 | CIT|C12orf34 | CIT | C12orf34 | 12 | 12 | -1 | 1 | 11 | 8 | 8 | 0.29 | 120204891 | 110181906 | tier1 | CDS-5UTR | 3740 | NA | 0 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | CIT|AC069214.1 | CIT | AC069214.1 | 12 | 12 | -1 | -1 | 6 | 5 | 4 | 1.3 | 120189855 | 121204175 | tier1 | Out-of-frame | 3739 | NA | 0.37263 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | HVCN1|GOLGA3 | HVCN1 | GOLGA3 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 0.21 | 111127531 | 133385135 | tier4 | 5UTR-CDS | 8043 | validated | 0.34764 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | ITPR2|ANO2 | ITPR2 | ANO2 | 12 | 12 | -1 | -1 | 25 | 13 | 13 | 1.4 | 26580846 | 5941769 | tier2 | In-frame | 8451 | NA | 0.36518 |
| LGG | TCGA-HT-7690-01A | TCGA-HT-7690 | ITPR2|ADIPOR2 | ITPR2 | ADIPOR2 | 12 | 12 | -1 | 1 | 18 | 22 | 20 | 0.43 | 26943090 | 1882008 | tier1 | Out-of-frame | 8450 | NA | 0.36432 |
| LIHC | TCGA-MI-A75I-01A | TCGA-MI-A75I | ITPR2|CLIC1 | ITPR2 | CLIC1 | 12 | 6 | -1 | -1 | 18 | 8 | 6 | 0.17 | 26943090 | 31704127 | tier1 | CDS-5UTR | 8453 | NA | 0.36681 |
| LIHC | TCGA-DD-A1EJ-01A | TCGA-DD-A1EJ | ITPR2|DCDC2 | ITPR2 | DCDC2 | 12 | 6 | -1 | -1 | 11 | 10 | 10 | 1.8 | 26780966 | 24278439 | tier1 | Out-of-frame | 8454 | non-validated | 0.3682 |
| LUAD | TCGA-55-1592-01A | TCGA-55-1592 | ITPR2|RASSF3 | ITPR2 | RASSF3 | 12 | 12 | -1 | 1 | 4 | 11 | 10 | 1.3 | 26943090 | 65078567 | tier1 | Out-of-frame | 8456 | NA | 0.36358 |
| PRAD | TCGA-EJ-7788-01A | TCGA-EJ-7788 | ITPR2|CLEC2A | ITPR2 | CLEC2A | 12 | 12 | -1 | -1 | 40 | 34 | 30 | 1.2 | 26703180 | 10074831 | tier1 | Out-of-frame | 8452 | NA | 0.36454 |
| STAD | TCGA-BR-8678-01A | TCGA-BR-8678 | ITPR2|RAD17 | ITPR2 | RAD17 | 12 | 5 | -1 | 1 | 3 | 8 | 8 | 1.2 | 26553061 | 68706320 | tier1 | Out-of-frame | 8455 | NA | 0.3753 |
| BRCA | TCGA-C8-A26W-01A | TCGA-C8-A26W | PKN1|LDLR | PKN1 | LDLR | 19 | 19 | 1 | 1 | 13 | 8 | 8 | 0.58 | 14557373 | 11226770 | tier1 | Out-of-frame | 12922 | NA | 0.39013 |
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