Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-92-8065-01A | TCGA-92-8065 | CSTA|CASR | CSTA | CASR | 3 | 3 | 1 | 1 | 136 | 96 | 90 | 1.8 | 122056495 | 121994659 | tier1 | In-frame | 4303 | NA | 0.37493 |
| DLBC | TCGA-FF-A7CQ-01A | TCGA-FF-A7CQ | CD80|WDR52 | CD80 | WDR52 | 3 | 3 | -1 | -1 | 7 | 3 | 3 | 0.29 | 119276476 | 113152516 | tier1 | CDS-5UTR | 3300 | NA | 0.36946 |
| OV | TCGA-13-0905-01B | TCGA-13-0905 | CAT|CD3D | CAT | CD3D | 11 | 11 | 1 | -1 | 22 | 20 | 16 | 0.24 | 34460626 | 118210209 | tier1 | Out-of-frame | 3037 | NA | 0.36052 |
| SKCM | TCGA-W3-A828-06A | TCGA-W3-A828 | CAT|TRIM44 | CAT | TRIM44 | 11 | 11 | 1 | 1 | 26 | 14 | 13 | 0.91 | 34482936 | 35827908 | tier1 | Out-of-frame | 3038 | NA | 0.36277 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | BAI2|SPOCD1 | BAI2 | SPOCD1 | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.063 | 32221600 | 32259836 | tier1 | Out-of-frame | 1913 | validated | 0.37198 |
| GBM | TCGA-16-1045-01B | TCGA-16-1045 | BAI2|HS3ST4 | BAI2 | HS3ST4 | 1 | 16 | -1 | 1 | 16 | 21 | 18 | 0.18 | 32221600 | 26146933 | tier1 | Out-of-frame | 1912 | NA | 0.36741 |
| UCS | TCGA-N5-A59E-01A | TCGA-N5-A59E | KHDRBS1|TMEM48 | KHDRBS1 | TMEM48 | 1 | 1 | 1 | -1 | 15 | 8 | 7 | 0.14 | 32479978 | 54238162 | tier2 | Out-of-frame | 8718 | NA | 0.37566 |
| UCEC | TCGA-KP-A3W1-01A | TCGA-KP-A3W1 | TNFSF10|NCEH1 | TNFSF10 | NCEH1 | 3 | 3 | -1 | -1 | 4 | 7 | 6 | 0.093 | 172241043 | 172365904 | tier1 | In-frame | 18343 | NA | 0 |
| DLBC | TCGA-FA-A6HN-01A | TCGA-FA-A6HN | CXCR4|CFLAR | CXCR4 | CFLAR | 2 | 2 | -1 | 1 | 77 | 33 | 31 | 0.085 | 136875616 | 201994452 | tier1 | CDS-5UTR | 4478 | NA | 0.38823 |
| LIHC | TCGA-ZS-A9CF-02A | TCGA-ZS-A9CF | ZRANB3|LCT | ZRANB3 | LCT | 2 | 2 | -1 | -1 | 2 | 2 | 2 | 0.01 | 136288697 | 136567563 | tier1 | 5UTR-CDS | 20709 | NA | 0 |
| PRAD | TCGA-KK-A7B4-01A | TCGA-KK-A7B4 | ZRANB3|TMEM163 | ZRANB3 | TMEM163 | 2 | 2 | -1 | -1 | 3 | 14 | 11 | 5.6 | 136288697 | 135309662 | tier1 | 5UTR-CDS | 20710 | NA | 0 |
| LUSC | TCGA-21-1082-01A | TCGA-21-1082 | ACVR2A|CASP8 | ACVR2A | CASP8 | 2 | 2 | 1 | 1 | 20 | 12 | 12 | 0.17 | 148674995 | 202131184 | tier1 | Out-of-frame | 398 | validated | 0.38497 |
| SARC | TCGA-DX-A6BF-01A | TCGA-DX-A6BF | ACVR2A|AC010859.1 | ACVR2A | AC010859.1 | 2 | 8 | 1 | 1 | 33 | 24 | 22 | 0.11 | 148602776 | 97847201 | tier1 | In-frame | 396 | NA | 0.37636 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | ACVR2A|AKT3 | ACVR2A | AKT3 | 2 | 1 | 1 | -1 | 5 | 4 | 3 | 0.086 | 148602776 | 243828185 | tier1 | In-frame | 397 | NA | 0.38595 |
| PRAD | TCGA-EJ-7318-01B | TCGA-EJ-7318 | ACVR2A|KANK1 | ACVR2A | KANK1 | 2 | 9 | 1 | 1 | 3 | 2 | 2 | 0.12 | 148672903 | 676890 | tier1 | CDS-5UTR | 399 | NA | 0.37864 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ACVR2A|SUMO1 | ACVR2A | SUMO1 | 2 | 2 | 1 | -1 | 2 | 34 | 31 | 0.089 | 148680680 | 203072044 | tier2 | Out-of-frame | 400 | validated | 0.38265 |
| KIRC | TCGA-B0-5706-01A | TCGA-B0-5706 | PAEP|FAR1 | PAEP | FAR1 | 9 | 11 | 1 | 1 | 2 | 73 | 52 | 100 | 138458622 | 13744912 | tier4 | NA | 12185 | NA | 0.36583 |
| PRAD | TCGA-G9-6384-01A | TCGA-G9-6384 | FMOD|THSD4 | FMOD | THSD4 | 1 | 15 | -1 | 1 | 2 | 19 | 16 | 0.007 | 203309756 | 72072881 | tier4 | 3UTR-CDS | 6588 | NA | 0.36063 |
| PRAD | TCGA-H9-7775-01A | TCGA-H9-7775 | FMOD|ARFGEF2 | FMOD | ARFGEF2 | 1 | 20 | -1 | 1 | 2 | 7 | 6 | 1 | 203309756 | 47615777 | tier4 | 3UTR-CDS | 6587 | NA | 0.36837 |
| LGG | TCGA-E1-A7Z2-01A | TCGA-E1-A7Z2 | PMS2|DNAH11 | PMS2 | DNAH11 | 7 | 7 | -1 | 1 | 6 | 6 | 6 | 0.41 | 6048628 | 21813384 | tier1 | Out-of-frame | 13116 | NA | 0.36232 |
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