TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
KIRC	TCGA-CJ-6030-01A	TCGA-CJ-6030	CLU\|CCT5	CLU	CCT5	8	5	-1	1	2	8	5	1.4	27455514	10250033	tier3	3UTR-5UTR	3869	NA	0.37003
KIRC	TCGA-DV-A4VZ-01A	TCGA-DV-A4VZ	CLU\|DDX21	CLU	DDX21	8	10	-1	1	2	342	318	1.8	27455514	70723858	tier4	NA	3870	NA	0.36721
LIHC	TCGA-5C-AAPD-01A	TCGA-5C-AAPD	CLU\|APOL3	CLU	APOL3	8	22	-1	-1	2	3	2	0.11	27455513	36541647	tier3	3UTR-5UTR	3868	NA	0.35402
LIHC	TCGA-DD-A73B-01A	TCGA-DD-A73B	CLU\|EPB41L1	CLU	EPB41L1	8	20	-1	1	2	2	2	0.92	27455514	34818077	tier4	3UTR-3UTR	3871	NA	0.37209
SARC	TCGA-3B-A9HU-01A	TCGA-3B-A9HU	CLU\|PPP1R12B	CLU	PPP1R12B	8	1	-1	1	3	1	1	1.2	27455514	202403784	tier3	3UTR-CDS	3872	NA	0.36959
SARC	TCGA-DX-A6BB-01A	TCGA-DX-A6BB	CLU\|SF3B2	CLU	SF3B2	8	11	-1	1	2	8	1	1.2	27455513	65836145	tier4	3UTR-CDS	3874	NA	0.36875
KIRP	TCGA-BQ-7056-01A	TCGA-BQ-7056	TNFRSF10B\|LOXL2	TNFRSF10B	LOXL2	8	8	-1	-1	7	3	3	0.52	22926264	23225947	tier1	CDS-5UTR	18335	NA	0
TGCT	TCGA-YU-A94I-01A	TCGA-YU-A94I	PTK2B\|SLC5A1	PTK2B	SLC5A1	8	22	1	1	2	5	4	3	27183198	32462922	tier3	5UTR-CDS	13790	NA	0.3854
SKCM	TCGA-EE-A3JI-06A	TCGA-EE-A3JI	PTK2B\|ICA1L	PTK2B	ICA1L	8	2	1	-1	3	3	1	0.071	27277590	203693739	tier4	CDS-5UTR	13789	non-validated	0.38679
BLCA	TCGA-HQ-A2OE-01A	TCGA-HQ-A2OE	EPHX2\|PTK2B	EPHX2	PTK2B	8	8	1	1	29	9	8	0.53	27375589	27308266	tier1	In-frame	5684	NA	0.38662
BRCA	TCGA-E9-A1NA-01A	TCGA-E9-A1NA	EPHX2\|BNIP3L	EPHX2	BNIP3L	8	8	1	1	2	4	4	1.4	27401761	26265516	tier2	Out-of-frame	5683	NA	0.35996
BRCA	TCGA-A8-A07I-01A	TCGA-A8-A07I	AKAP1\|ANKFN1	AKAP1	ANKFN1	17	17	1	1	2	9	9	0.028	55162759	54428127	tier2	5UTR-CDS	717	validated	0.36476
BRCA	TCGA-E2-A15H-01A	TCGA-E2-A15H	AKAP1\|C17orf67	AKAP1	C17orf67	17	17	1	-1	12	6	6	0.28	55184539	54893371	tier1	CDS-5UTR	718	validated	0
BRCA	TCGA-E2-A15H-01A	TCGA-E2-A15H	AKAP1\|GGA3	AKAP1	GGA3	17	17	1	-1	6	12	11	0.55	55162759	73242877	tier1	5UTR-CDS	719	non-validated	0.36742
BRCA	TCGA-A8-A09I-01A	TCGA-A8-A09I	AKAP1\|WIPF2	AKAP1	WIPF2	17	17	1	1	2	11	10	0.3	55162759	38412643	tier2	5UTR-5UTR	720	non-validated	0.36257
BRCA	TCGA-A8-A07I-01A	TCGA-A8-A07I	TEX14\|SDK2	TEX14	SDK2	17	17	-1	-1	3	1	1	0.54	56661861	71387677	tier2	Out-of-frame	17681	validated	0
BLCA	TCGA-BT-A20T-01A	TCGA-BT-A20T	PLBD1\|CREBL2	PLBD1	CREBL2	12	12	-1	1	5	5	4	0.32	14688593	12788711	tier1	Out-of-frame	12954	non-validated	0.33597
PRAD	TCGA-XK-AAJA-01A	TCGA-XK-AAJA	BCL2L14\|GPR19	BCL2L14	GPR19	12	12	1	-1	14	7	6	0.44	12240320	12848445	tier1	CDS-5UTR	2032	NA	0.35985
BRCA	TCGA-A7-A13D-01A	TCGA-A7-A13D	BCL2L14\|ETV6	BCL2L14	ETV6	12	12	1	1	4	3	3	1.9	12232672	12037379	tier1	In-frame	2030	non-validated	0.36742
BRCA	TCGA-EW-A6SB-01A	TCGA-EW-A6SB	BCL2L14\|ETV6	BCL2L14	ETV6	12	12	1	1	3	5	5	1.9	12232672	11992074	tier1	In-frame	2031	NA	0.36742

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