Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 124 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DU-6397-01A | TCGA-DU-6397 | ATAD2B|AC008073.5 | ATAD2B | AC008073.5 | 2 | 2 | -1 | -1 | 3 | 6 | 5 | 0.76 | 24092533 | 24290721 | tier1 | Out-of-frame | 1584 | non-validated | 0.34962 |
| PRAD | TCGA-EJ-7314-01A | TCGA-EJ-7314 | IDE|CAMK1D | IDE | CAMK1D | 10 | 10 | -1 | 1 | 12 | 9 | 7 | 0.49 | 94243012 | 12802947 | tier1 | In-frame | 8052 | NA | 0.37111 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | CPN1|ACTR1A | CPN1 | ACTR1A | 10 | 10 | -1 | -1 | 5 | 5 | 5 | 0.65 | 101823371 | 104245490 | tier1 | Out-of-frame | 4131 | validated | 0.36612 |
| BRCA | TCGA-A8-A06P-01A | TCGA-A8-A06P | CRHR1|CENPP | CRHR1 | CENPP | 17 | 9 | 1 | 1 | 2 | 1 | 1 | 0.24 | 43861943 | 95373596 | tier3 | In-frame | 4217 | NA | 0.36474 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | CRHR1|SPOP | CRHR1 | SPOP | 17 | 17 | 1 | -1 | 11 | 41 | 41 | 0.29 | 43699407 | 47700238 | tier1 | 5UTR-5UTR | 4218 | NA | 0.37578 |
| PRAD | TCGA-QU-A6IO-01A | TCGA-QU-A6IO | DUSP1|MFN1 | DUSP1 | MFN1 | 5 | 3 | -1 | 1 | 2 | 3 | 2 | 1.3 | 172195093 | 179096011 | tier4 | NA | 5175 | NA | 0.37774 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | CD274|IGFBPL1 | CD274 | IGFBPL1 | 9 | 9 | 1 | -1 | 12 | 12 | 10 | 1.7 | 5465606 | 38409214 | tier1 | CDS-3UTR | 3262 | NA | 0.34288 |
| PRAD | TCGA-G9-6361-01A | TCGA-G9-6361 | SLC10A7|FKBP15 | SLC10A7 | FKBP15 | 4 | 9 | -1 | -1 | 5 | 4 | 3 | 0.097 | 147363935 | 115932909 | tier1 | In-frame | 16007 | NA | 0 |
| PRAD | TCGA-HC-A632-01A | TCGA-HC-A632 | SLC10A7|EYS | SLC10A7 | EYS | 4 | 6 | -1 | -1 | 3 | 2 | 2 | 0.12 | 147442770 | 65767620 | tier1 | In-frame | 16006 | NA | 0 |
| OV | TCGA-13-0760-01A | TCGA-13-0760 | SLC10A7|TTC29 | SLC10A7 | TTC29 | 4 | 4 | -1 | -1 | 2 | 4 | 4 | 0.085 | 147438190 | 147628703 | tier2 | Out-of-frame | 16008 | NA | 0 |
| BRCA | TCGA-AC-A3OD-01B | TCGA-AC-A3OD | HSPH1|KIAA0825 | HSPH1 | KIAA0825 | 13 | 5 | -1 | -1 | 8 | 3 | 3 | 0.19 | 31714321 | 93820635 | tier1 | Out-of-frame | 8018 | NA | 0.37309 |
| HNSC | TCGA-CR-6474-01A | TCGA-CR-6474 | HSPH1|PLEKHA5 | HSPH1 | PLEKHA5 | 13 | 12 | -1 | 1 | 2 | 19 | 18 | 0.84 | 31710765 | 19441012 | tier4 | NA | 8019 | NA | 0.37328 |
| LGG | TCGA-HT-8010-01A | TCGA-HT-8010 | HSPH1|DDX27 | HSPH1 | DDX27 | 13 | 20 | -1 | 1 | 2 | 4 | 3 | 0.34 | 31710765 | 47849303 | tier3 | NA | 8017 | NA | 0.37369 |
| CESC | TCGA-ZJ-AAXN-01A | TCGA-ZJ-AAXN | TGFBI|ANXA1 | TGFBI | ANXA1 | 5 | 9 | 1 | 1 | 2 | 72 | 1 | 2.7 | 135399504 | 75772570 | tier3 | 3UTR-5UTR | 17736 | NA | 0 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | TGFBI|TNNT1 | TGFBI | TNNT1 | 5 | 19 | 1 | -1 | 2 | 17 | 1 | 1.3 | 135399504 | 55646910 | tier2 | NA | 17738 | NA | 0 |
| SKCM | TCGA-FS-A1ZH-06A | TCGA-FS-A1ZH | TGFBI|RABEP1 | TGFBI | RABEP1 | 5 | 17 | 1 | 1 | 2 | 120 | 11 | 0.15 | 135399504 | 5283828 | tier4 | NA | 17737 | NA | 0 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | NR2C1|BCL7A | NR2C1 | BCL7A | 12 | 12 | -1 | 1 | 18 | 25 | 24 | 1.9 | 95461107 | 122468606 | tier1 | Out-of-frame | 11713 | NA | 0.36917 |
| STAD | TCGA-BR-7959-01A | TCGA-BR-7959 | APAF1|HOXC10 | APAF1 | HOXC10 | 12 | 12 | 1 | 1 | 32 | 166 | 151 | 0.49 | 99042275 | 54382953 | tier4 | Out-of-frame | 1097 | NA | 0.37741 |
| UCEC | TCGA-DI-A2QY-01A | TCGA-DI-A2QY | APAF1|LRRIQ1 | APAF1 | LRRIQ1 | 12 | 12 | 1 | 1 | 2 | 1 | 1 | 0.39 | 99093347 | 85638567 | tier3 | In-frame | 1098 | NA | 0.37612 |
| ACC | TCGA-OR-A5JF-01A | TCGA-OR-A5JF | CLU|SEC63 | CLU | SEC63 | 8 | 6 | -1 | -1 | 2 | 190 | 173 | 0.058 | 27455514 | 108214782 | tier3 | NA | 3873 | NA | 0.36465 |
|
Showing page 124 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.