TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
SKCM	TCGA-EB-A44Q-06A	TCGA-EB-A44Q	SLC16A7\|GOLPH3	SLC16A7	GOLPH3	12	5	1	-1	5	9	9	0.13	59990017	32135792	tier1	5UTR-CDS	16035	NA	0
CESC	TCGA-EA-A3HS-01A	TCGA-EA-A3HS	RPN2\|ERBB3	RPN2	ERBB3	20	12	1	1	2	18	17	0.15	35870020	56492035	tier3	NA	15015	NA	0
UCS	TCGA-N8-A4PN-01A	TCGA-N8-A4PN	RPN2\|ZBTB46	RPN2	ZBTB46	20	20	1	-1	5	7	7	0.46	35858462	62422143	tier1	CDS-5UTR	15016	NA	0
KIRC	TCGA-AK-3444-01A	TCGA-AK-3444	SPP1\|TYK2	SPP1	TYK2	4	19	1	-1	2	7	5	2.9	88904562	10491352	tier3	3UTR-5UTR	16769	NA	0
KICH	TCGA-KN-8418-01A	TCGA-KN-8418	SPP1\|STAT6	SPP1	STAT6	4	12	1	-1	2	25	11	0.064	88904562	57496773	tier4	NA	16767	non-validated	0
LUSC	TCGA-92-8063-01A	TCGA-92-8063	SPP1\|THSD4	SPP1	THSD4	4	15	1	1	2	49	44	1.8	88904562	72072881	tier3	3UTR-CDS	16768	NA	0
BRCA	TCGA-A8-A07U-01A	TCGA-A8-A07U	MFSD1\|GFM1	MFSD1	GFM1	3	3	1	1	13	7	6	1.1	158545126	158399784	tier1	In-frame	10290	NA	0.34727
SARC	TCGA-DX-A8BH-01A	TCGA-DX-A8BH	MFSD1\|CLDN11	MFSD1	CLDN11	3	3	1	1	35	84	78	0.19	158531856	170577772	tier1	CDS-3UTR	10289	NA	0.34559
SARC	TCGA-DX-A8BH-01A	TCGA-DX-A8BH	MFSD1\|SPTSSB	MFSD1	SPTSSB	3	3	1	-1	4	4	4	3.3	158531856	161077682	tier1	CDS-5UTR	10291	NA	0.33308
CESC	TCGA-VS-A8EC-01A	TCGA-VS-A8EC	CYP20A1\|C18orf34	CYP20A1	C18orf34	2	18	1	-1	12	10	9	0.23	204116832	30795659	tier1	In-frame	4496	NA	0
THCA	TCGA-ET-A3DQ-01A	TCGA-ET-A3DQ	FKBP15\|RET	FKBP15	RET	9	10	-1	1	14	6	6	0.51	115932802	43612032	tier1	In-frame	6548	NA	0.38736
BRCA	TCGA-A2-A0EW-01A	TCGA-A2-A0EW	HSDL2\|FRMD3	HSDL2	FRMD3	9	9	1	-1	5	6	6	0.63	115142460	86004623	tier1	Out-of-frame	7980	NA	0.33841
MESO	TCGA-TS-A8AY-01A	TCGA-TS-A8AY	HSDL2\|TEX10	HSDL2	TEX10	9	9	1	-1	14	13	9	0.03	115142460	103111654	tier1	CDS-5UTR	7981	NA	0.34388
BRCA	TCGA-AC-A8OQ-01A	TCGA-AC-A8OQ	NEK9\|RP11-293M10.1	NEK9	RP11-293M10.1	14	14	-1	-1	2	3	2	0.46	75568360	75705892	tier2	Out-of-frame	11365	NA	0.3742
LGG	TCGA-HT-A619-01A	TCGA-HT-A619	COQ6\|FLRT1	COQ6	FLRT1	14	11	1	1	18	9	8	0.3	74417198	63883691	tier1	CDS-5UTR	4072	NA	0.35718
LUAD	TCGA-05-4382-01A	TCGA-05-4382	COQ6\|ACOT4	COQ6	ACOT4	14	14	1	1	2	3	3	100	74428606	74061753	tier3	In-frame	4071	NA	0.3485
KIRP	TCGA-G7-6792-01A	TCGA-G7-6792	DNMT3A\|GTF3C2	DNMT3A	GTF3C2	2	2	-1	-1	3	2	2	2.2	25458576	27566445	tier1	CDS-5UTR	5009	NA	0.363
LIHC	TCGA-EP-A2KA-01A	TCGA-EP-A2KA	DNMT3A\|HADHA	DNMT3A	HADHA	2	2	-1	-1	4	4	3	1.7	25475063	26438044	tier1	In-frame	5010	validated	0.36507
SKCM	TCGA-D3-A3C7-06A	TCGA-D3-A3C7	DNMT3A\|DTNB	DNMT3A	DTNB	2	2	-1	-1	13	50	40	0.39	25564695	25602192	tier1	5UTR-CDS	5008	NA	0.36571
BRCA	TCGA-LL-A740-01A	TCGA-LL-A740	ATAD2B\|ITSN2	ATAD2B	ITSN2	2	2	-1	-1	2	1	1	0.15	24021008	24426652	tier2	Out-of-frame	1585	NA	0.37292

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